Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGGgtatattctttcatttggttttcacatatatctaatatttttaaaattgtttgatcaggtttaaatgactgctaaatgacatgtatttcttcag
Basic information
species | Glycine max |
transcript | GLYMA08G15880.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G15880.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g23930.1 (Oryza sativa), 5'ss of exon 2
TGGTG-AAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGGgtata-------ttctttcatttggttttcacatatatctaat---atttttaaaattgtttgatcaggtttaaatgactgctaaatgacatgtatttc----ttcag
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-GCCACAGACAGATATGGAAACACAAATTCATCAGCTTGAGCAAGATGCATATTGTTCTGTTCTTCGTGCATTTAAAGCACAATCTGATGCTATTTCATGGgtaaaacaccacttaactctgtcattcttcatcttcatttggtgtaatcgttagcagttcttttttccgcaaaactgaccaaaagacaattttgaattcaacttctag
upper sequence: GLYMA08G15880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G44440.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGGgtatattctttcatttggttttcacatatatctaatatttttaaaattgtttgatcaggtttaaatgactgctaaatgacatgtatttcttcag
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TCTTGCTGCGGATATGGAAGCTCAGATTCACCAGATTGAGAAGGAAGCATATATCTCTGTTTTAAGAGCCTTTAAAGCCCAAGGAGATGCTATTTCATGGgta--ttttttgatctactttg---atttctcttgttgtgttag---tgtctggttaggtg-gaataacatgtattttatgttcag--------
upper sequence: GLYMA08G15880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0156g00360.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGGgta-tattctttcatttggttttcacatatatctaatatttttaaaa--ttgtttgatcaggtttaaatgactgctaaatgacatgtattt-cttcag
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TGGTGAAACTGATATGGAGACCCAAATTCACCAACTAGAGCAAGAAGCATATAGTTCAGTTTTAAGAGCCTTCAAAGCTCAAGCTGATGCCATTACTTGGgtacttttctgtcattttgttt--gcatgaacctaatattctaaggaattttttttaccaggtttag-taactgctaaatgcaatgttttttcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399844|gb|EV269715.1|EV269715EST: ACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGG GAGAAGGAAAGTTTGATTACAGAACTTAGAAAAGAACTAAGATTATCAAAT
genomic: ACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGGgtatattctt ... atttcttcagGAGAAGGAAAGTTTGATTACAGAACTTAGAAAAGAACTAAGATTATCAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAATTCTACGGGCATTTAAAGCTCAAGCTGATGCCATTTCTTGGgtatattctttcatttggttttcacatatatctaatatttttaaaattgtttgatcaggtttaaatgactgctaaatgacatgtatttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT