1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAACGAAAGTAGCAAGCCTTCATTTAAATGGCGAAGGGTTTTGCTCAAAGTTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGgttacataccctgctttgctttcccactctatttctctattcaattcttctttttttaataacttctcacttgcaggagctgcacatttttctactattt...
species | Glycine max |
transcript | GLYMA08G15610.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAG ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTEST: gi|16277118|gb|BI942213.1|BI942213
genomic: TTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGgttacatacc ... ttggatacagATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATT
EST: TTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAG ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTEST: gi|5510217|gb|AI856601.1|AI856601
genomic: TTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGgttacatacc ... ttggatacagATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATT
EST: TTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAG ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATT
genomic: TTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGgttacatacc ... ttggatacagATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGAAAGTAGCAAGCCTTCATTTAAATGGCGAAGGGTTTTGCTCAAAGTTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGgttacataccctgctttgctttcccactctatttctctattcaattcttctttttttaataacttctcacttgcaggagctgcacatttttctactattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc