1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCCACCGATATTTTGCAGCTCTGCTTCGATGCACGAGCCTGGAAAACACTCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcagcgttccgattattattattattattttattttatttcatgtgtggaaaaacctcttaggttacgtgaattgctctgtggtgttttgtgtg...
species | Glycine max |
transcript | GLYMA08G15340.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|193398918|gb|FK365260.1|FK365260
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|308098358|gb|HO760099.1|HO760099
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|208053380|gb|GD855715.1|GD855715
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|207759636|gb|GD731335.1|GD731335
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|308098130|gb|HO761301.1|HO761301
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|254320644|gb|GR827093.1|GR827093
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|192296110|gb|FG989470.1|FG989470
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: CGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|6566939|gb|AW234570.1|AW234570
genomic: CGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|15286081|gb|BI469972.1|BI469972
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCTATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|192334269|gb|FK024396.1|FK024396
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|15284757|gb|BI468648.1|BI468648
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCAEST: gi|12690044|gb|BG156380.1|BG156380
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
EST: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAG GCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
genomic: TCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcag ... atgtttgcagGCTGTAACAGCTATGGTGCAACAGGCTATGCAATATATTGACGAGACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCACCGATATTTTGCAGCTCTGCTTCGATGCACGAGCCTGGAAAACACTCAATGACCAGATTGTCGTTTTGTCAAAACGACGTGGCCAGCTCAAGCAGgtgctcgcagcgttccgattattattattattattttattttatttcatgtgtggaaaaacctcttaggttacgtgaattgctctgtggtgttttgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaac