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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag

Basic information

species Glycine max
transcript GLYMA08G15250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
  | || || || || ||  | ||||| ||||| |||||||| || || ||||| || |||||||| |||||||||||||||||||| || |||||||||||   ||   || ||||   |  | |||       |||  | | |||  |  |     | || | |    | ||  |    |  |  | |                   
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagtaattttaaatcct-tct------atattcaatgttagaatgg---agggcacatactaattttcgtttcatgcctcttcag-----------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
| | ||  | || || || || ||||||||||| ||||||||  | || ||||| || |||||||| |||||||||||||||||||| || ||||| ||||| |  |   ||  |   |  ||||          | |  | |||||  | ||     ||   | |||   ||||   |    | | |  ||                 
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaactaagtccttta---------atgttcacttttagaattg-----gatgcatatactaatttgctcctcatgcctttttcag--------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
| | ||  |||| ||||| || || |||||  | ||| | || || || ||||| || ||||||||||| ||||||||||||||||| || || ||||||||   | | |       || |  || ||  ||    |||| |  || | |||  ||   || ||           || || |||| | ||||                 
CTTACCAATACCAGATCTGATTAAGTTTGTGATCTTTTCGAACTTGTCAATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGATTTTATCAGgt--tagcaaaggaccgttctagtagcta-gattccatcatggctttaaactttcaactactaaa--------caatcctttttcttcccttcag--------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatca-agttttaacactgccagtgacaaa-gataggtatttatactgtttccttcctttgaaatgaaaacttcag
| | ||  | || ||||| || ||||||||  | ||| | || || || ||||| || ||||||||||| ||||||||||||||||| || || ||||||||   | | |    |  || |  || ||   |    ||||  | ||| |   | | |||  |||| | ||   | |  |  ||||  ||||                    
CTTACCACTGCCAGATCTGATTAAATTTGTGATCTTTTCGAACTTGTCGATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGGTTTTATCAGgt--tagcaaaggatggttctgctagcta-aattccatcatggctttgaactttcaagtttcaaaagctaaagaatccttttgttctcttcag------------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
 || || |||||||| ||  | ||||| | ||| ||||| ||  | |||||||| || |||||||| || ||||||||||||||||| || |||||||||||    ||   |  ||   | ||   || | |   ||||    || |||      | ||||       | | | | |  ||  |  |||                    
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagacagaaacttcgatatt---ctataagtatatcggaattaaacttgtatactgac-------gctgtctgtcttgcctttttcag------------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
  | || ||||| || ||  | || |||| ||| ||||||||  | || || ||||| ||||| || |||||||||||||||||||| || ||||||||||| |   |   |  |||  | ||   || | |   |||     || |||   |    |   || | |  |||| | | |  ||| |                       
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtatt---ctataagtatattggagttaaac---gtatatactaatgctgtgtatct-tgcccttttcag---------------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G071378_T02 (Zea mays), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
| | ||| || | |||||  | ||||||||  ||||| | || || || ||||| || ||||||||||| ||||||||||||||||| || || ||||||||       | ||||||  |    | ||   | | |||  |   |||| | ||  |   ||  |       ||| || || || |||| ||  |               
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTGGGCTTTTATCAGgt--tggtgaaatttttagt----agctgctataatatgcaaccttaa-attgttaacaactga-------attcattctattcccttgctcag---------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
| | ||| || | |||||  | ||||||||  ||||| | || || || ||||| || ||||||||||| ||||||||||||||||| || || ||||||||       | |||||||  |           |  |   |  || |   ||    | |    || ||   |||| ||  | || |||| ||  |               
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTTGGCTTTTATCAGgt--tggtgagattttttagt-----------agctgctatattatgcgaccttgaatcgttaacatctatattcattttattcccttgctcag---------------

upper sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag
 || ||  || |||| ||| | | |||||| || ||||||||||| || ||||| || ||||| |||||||| |||||||||||||| || ||||||||||| |    |      |  |   ||   ||||      |   | | | | | |     |  ||||| ||   | ||||     ||| |||  || |||     |  ||||
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactt---tttgttctccttttgctctcatatttttttt--caaagttaca-agttatg----ttctttctcttcaaactttgatgtcag