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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGCAAACTTCTGCAGCATGCTACAACCATATATCTACATCATACAATAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgtttttcttattcctcgaatattttactgtatgattgcattatgcctctcattcttgaagtgcctgataatatatttttaaattgctatccataac...

Basic information

species Glycine max
transcript GLYMA08G14850.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14850.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 2
GCAGAGCAAACTTCTGCAGCATGCTACAACCATATATCTACATCATACAATAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgtttttcttattcctcgaatattttactgtatgattgcattatgcctctcattcttgaagtgcctgataata--tatttttaaattgctatccataac---
||| || || || || || ||||||||||||||||| || || ||| ||||||  |||||||| ||| |||| ||| ||||||||||||||||||| ||||||  || |    |||| |      ||| |  | |        |     ||||   |  |       |  ||||||  |     ||| |||  || | ||     
GCAAAGTAAGCTACTCCAACATGCTACAACCATATACCTGCACCATGCAATAGCAGATTTTGCAGAGGCATTAGCATCAAAAATGCCTGGAAACCTAAAGgtccattctctaaattcttt-----tttgataggaaagaaaggtccattctctagattctagttcctcatataataggtgcacctaagttgtgatacttatggga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996135|gb|BM085507.1|BM085507
EST:     TAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAG                         GTTGTTTATTT
genomic: TAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgttttt ... taaattgcagGTTGTTTATTT