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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcgattccatcctttttttccgaacaaaacatgtcttcttgtgttcgccgcatgatatgttgtttctaacag

Basic information

species Glycine max
transcript GLYMA08G14780.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331293|gb|FK021004.1|FK021004
EST:     AGAGGACGATTCTCAAAGCTCTCTTCCAG                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|298182193|gb|HO026368.1|HO026368
EST:     AGAGGACGATTCTCAAAGCTCTCTTCCAG                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|298192264|gb|HO036346.1|HO036346
EST:     AGAGGACGATTCTCAAAGCTCTCTTCCAG                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|192331184|gb|FK020951.1|FK020951
EST:     AGAGGACGATTCTCAAAGCTCTCTT-C--                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|298191659|gb|HO039138.1|HO039138
EST:     AGAGGACGATTCTCAAAGCTCTCTTCCAG                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|192327943|gb|FK022474.1|FK022474
EST:     AGAGGACGATTCTCAAAGCTCTCTT-C--                         CAGAAAATGGTGAGGGCGAGG-A-A-GAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|298177830|gb|HO027383.1|HO027383
EST:     AGAGGATGATTCTCAAAGCTCTCTTCCAG                         T
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacag-
EST: gi|298177830|gb|HO027383.1|HO027383
EST:     AGAGGATGATTCTCAAAGCTCTCTTCCAG                         T
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacag-
EST: gi|298178454|gb|HO024189.1|HO024189
EST:     AGAGGACGATTCTCAAAGCTCTCTT-C--                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA
EST: gi|298194036|gb|HO040684.1|HO040684
EST:     AGAGGACGATTCTCAAAGCTCTCTTCCAG                         CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAGCTCACGGAACCTAAAA
genomic: AGAGGACGATTCTCAAAGCTCTCTTCCAGgtactcctcg ... tttctaacagCAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAA