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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaagaaccaacacaagacaatacacgcagagataaaggat...

Basic information

species Glycine max
transcript GLYMA08G13610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G108589_T02 (Zea mays), 5'ss of exon 3
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaagaaccaacacaagacaatacacgcagagataaaggat
 ||  || |||| ||||     |  |||||||     |||||  | || ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||  |      |  ||| |       |   |   |  | | ||||| |   | | || ||||      |   |     |     | | | |||    
ACGGTTGCCAGGCTCTGTTACCTCATTTGAAGATGAGGATATACCTGGTGTTGTAGTTCCATGGCTTTATGTAGGAATGTGCTTCTCTTCATTTTGCTGGgtaaggttcttagctaatctgtttccacatttctctcataaaatgtagatcccttactcaaaagagattctattgggtttgaatttgaaaaaaaaaatgc

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G044301_T01 (Zea mays), 5'ss of exon 3
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaagaaccaacacaagacaatacacgcagagataaaggat-
 || ||| | || ||||   | |  ||||| | |   ||||| || || ||||| || || ||||| ||||| ||||||||||| || |||||||||||||||||  ||     |  ||| |       |   |   |  |    | || |   | | ||  | |   ||         ||  || | |  | |||  || 
ACGGCTGCCTGGATCTGTTATCTCATTTGAGGAAGACGATATATCTGGTGTTGTTGTCCCGTGGCTTTATGTAGGAATGTGCTTCTCTTCATTTTGCTGGgtaagatttttagctaatctgtttgcccatttctctcatgaattttggatcccttactcagtaaagagaagcttttgtgattgacactgcaa-aaattatc

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaagaaccaacacaagacaatacacgcagagataaaggat
 || ||  | || |||| | | | ||||||||   |||| || || |||||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||         ||  |  | |||| ||    ||  |     |  ||    || |     ||    | |        | |  | | ||         
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtacactttcactctttgattttattataaacattttttc-tctaatgtttggatgtttgatgtgatatttctttgt-cttgaacag---------

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaaga-accaacacaagacaatacac-gcagagataaaggat
 || ||| | || || |   ||  ||||||  |  | ||||||||||||||  | || |||||||| ||||||||||||||||||||  | ||||| ||||||||| | |      |    ||   |  |  |    |||  |  | | |   ||   |    || |    |   | |  |||    || || | ||||   
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtttcattttcttagggtagactcttgctaattactgaa--tcgcatgaataatcttttgatatttcctggaaattatatgttgctgaaaaaaagctg

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0092g00210.t01 (Vitis vinifera), 5'ss of exon 6
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctacttta-ctaattgcaactagaggtagaacagatgcacacaagaaccaacacaagacaata-cacgcagagataaaggat--
 |||||| | ||||||| | | |||||||||  || |||||||||||||||| | || |||||||| ||||| || |||||||| || |||||||| |||||||||  | ||||| | |||||    | ||       ||   |   |||| |  |  | | ||    |||   ||| ||  | | ||  |   |  ||  |  
CCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGgtaagttatgggaat-tcctctatcaaagctgtacatgacgctaaaaagaaaaattaaataaaaagggcaa---aaggcagaatctcgttgttcttcagctttg

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S127_125V6.1 (Physcomitrella patens), 5'ss of exon 6
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaag--aaccaacacaagacaatacacgcagagataaaggat-------------------------------------------------------------
  ||    | |||||     |||  ||||| |   | || || || || ||  | || || ||| ||||  |||| ||||||||||| ||||||||||||||||||   |  || ||   ||   ||  |   |  ||    |  |  |        ||   ||   |   ||| |    | | |   | |  |   |  ||                                                             
AAGATATCCTGGTTCCATGCTATCATTTGAGGATGGAGACATTTCTGGGGTGCTTGTGCCGTGGTTGTACATTGGGATGTGCTTTTCTTCATTTTGCTGGgtaagta--aaaaacctgacctgaattgatttctcgaatgtaacatgcagttatcaaacttgagttgatgtacagactttagtgcgttctgcaacttaccatttcgcgatatggatgttaaccttgtagtcctaatcttcataaattgtggagtattttgcag

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ29865 (Selaginella moellendorffii), 5'ss of exon 2
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggta-gaacagatgcacacaaga-accaacacaagacaatacacgcagagataaaggat
 ||||||  ||| || |   |    |||||||     || ||||| ||||| || || ||||||||||| ||||| ||||| || ||||| |||||||||||||||      |   | |   |    || |   | ||||||||  | ||  |||   || |     ||          ||                     
ACGACTGAAAGGATCAGTGCTTGAGTTTGAAGCCGACGAAATCTCGGGAGTCGTCGTGCCATGGCTGTACGTTGGGATGTGTTTCTCCTCCTTTTGCTGGgtaagtt-----agcttgcatcaaggaacaa---ggaactagagaaacgagaagacaaacgctgtttacttttctttttcag--------------------

upper sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ08267 (Selaginella moellendorffii), 5'ss of exon 2
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggta-gaacagatgcacacaaga-accaacacaagacaatacacgcagagataaaggat
 ||||||  ||| || |   |    |||||||     || ||||| ||||| || || ||||||||||| ||||| ||||| || ||||| |||||||||||||||      |   | |   |    || |   | ||||||||  | ||  |||   || |     ||          ||                     
ACGACTGAAAGGATCAGTGCTCGAGTTTGAAGCCGACGAAATCTCGGGAGTCGTCGTGCCATGGCTGTACGTTGGGATGTGTTTCTCCTCCTTTTGCTGGgtaagtt-----agcttgcatcaaggaacaa---ggaactagagaaacgagaagacaaacgctgtttacttttttttttcag--------------------