Sequence
atgc intronic sequence ATGC exonic sequenceTGATTTTGTTGACTTCTTCAACAGTCATCAAAAGCTACAAAAGTTTGACATTCATGGAGCCATGTTTGCAGCTCTTTGCCAGAAGAACAGTCTCAAACATgtaagttcataataatattacccttctgattgagggtgttgtttaatatttcaattcatctaatgaggatatttcacag
Basic information
species | Glycine max |
transcript | GLYMA08G13480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G13480.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g28120.1 (Oryza sativa), 5'ss of exon 3
TGATTTTGTTGACTTCTTCAACAGTCATCAAAAGCTACAAAAGTTTGACATTCATGGAGCCATGTTTGCAGCTCTTTGCCAGAAGAACAGTCTCAAACATgtaagttcataataatatt----------acccttctgattgagggtgttgtttaatatttcaattcat--ctaatgaggatatttcacag------
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CGATTTGGTCGACTTCTTCAACAGCCACCCGAATCTCCGCAAGTTTGATATTCATGGTGCCATGTTTGCTGCTCTGTGCCAGAAAAACAGCTTGAAGAATgtgagtgtttggtttggctttcgcggcatagcattgaactttaggttgttatgtaaggtattgatagatggctaatatttgtgaattgtgaatgcag
upper sequence: GLYMA08G13480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0034g01430.t01 (Vitis vinifera), 5'ss of exon 2
TGATTTTGTTGACTTCTTCAACAGTCATCAAAAGCTACAAAAGTTTGACATTCATGGAGCCATGTTTGCAGCTCTTTGCCAGAAGAACAGTCTCAAACATgtaagtt--------cataataatattac-ccttctgattgagggtgttgtttaatattt--caattcatctaatgaggatatttcacag--------
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TGACTTTGTTGACTTCTTTAACAGCCATCCTAAGCTGCAAAAATTTGACATCCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTGAAAAATgtaaattgatgagatcataacaatgctattccccctgattcaaaaggatgctcaaaatttagcattttaacaaagattggtctttttcattcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31457816|gb|CD399844.1|CD399844EST: TTCATGGAGCCATGTTTGCAGCTCTTTGCCAGAAGAACAGTCTCAAACAT GTGGATTCAGGATTTGTGATTCCGTTTTTGGAGGAAGTGGTGATCACAGTG
genomic: TTCATGGAGCCATGTTTGCAGCTCTTTGCCAGAAGAACAGTCTCAAACATgtaagttcat ... tatttcacagGTGGATTCAGGATTTGTGATTCCGTTTTTGGAGGAAGTGGTGATCACAGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTTTGTTGACTTCTTCAACAGTCATCAAAAGCTACAAAAGTTTGACATTCATGGAGCCATGTTTGCAGCTCTTTGCCAGAAGAACAGTCTCAAACATgtaagttcataataatattacccttctgattgagggtgttgtttaatatttcaattcatctaatgaggatatttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC