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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTGGATGAATTGGCTAGGAATGTTAGCACCAAGAATCTTGAGCATGTGCGGAGTTTAAAGAGTAATCTTACGCGGTTGCTGGCACGAGTGCAGAAGgtatgtttttgcacaagtaccgtgtggttcttcctctgatgtggatagttaattcgttacttatagatgactgtggaaaattgaaattgagaatagaagg...

Basic information

species Glycine max
transcript GLYMA08G13340.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13340.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0034g02550.t01 (Vitis vinifera), 5'ss of exon 2
TGTGTTGGATGAATTGGCTAGGAATGTTAGCACCAAGAATCTTGAGCATGTGCGGAGTTTAAAGAGTAATCTTACGCGGTTGCTGGCACGAGTGCAGAAGgtatgtttttgcacaagtaccgtgtggttcttcctctgatgtggatagtta--attcgttacttatagatgactgtggaaaattgaaattgagaatagaagg
|||  |||||||  |||| ||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| ||  | || || |||||||| |||||||  || |   |   || |               |  | | ||||  |   ||||  | |||  |  ||  | |      |  | |         |||| 
TGTCCTGGATGAGCTGGCCAGGAACGTTAGCACCAAGAATCTTGAACATGTCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAGgtattcttctcttcc--tatcaaaaaaaaaaaagggtattcttgataaatgctattcccttcttgcatttggttcttatttttgcatacctcatcatgaaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018095|gb|CX704837.1|CX704837
EST:     AAGAGTAATCTTACGCGGTTGCTGGCACGAGTGCAGAAG                         GTGCGAGATGAAATTGAACATCTGTTAGATGACAATGAAGATATGGCACAA
genomic: AAGAGTAATCTTACGCGGTTGCTGGCACGAGTGCAGAAGgtatgttttt ... tctttcacagGTGCGAGATGAAATTGAACATCTGTTAGATGACAATGAAGATATGGCACAA