1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAGGTATTCCTGATGCTGCTGGGATACGTTCTACTGTGTGGAAGgttaggtttccttttcattctgtttttttccctacatttagtctttttttttagagtttaatttccttgcactattactgtagagatttttacattatca...
species | Glycine max |
transcript | GLYMA08G11760.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTGTCAAGGTATTCCTGATGCTGCTGGGATACGTTCTACTGTGTGGAAG CTTTTGCTTGGATATCTTCCACCAGATCGAGGGCTTTGGTCAGCTGAATTAEST: gi|37997369|gb|CF808958.1|CF808958
genomic: CGTGTCAAGGTATTCCTGATGCTGCTGGGATACGTTCTACTGTGTGGAAGgttaggtttc ... atacttgcagCTTTTGCTTGGATATCTTCCACCAGATCGAGGGCTTTGGTCAGCTGAATTA
EST: CGTGTCAAGGTATTCCTGATGCTGCTGGGATACGTTCTACTGTGTGGAAG CTTTTGCTTGGATATCTTCCACCAGATCGAGGGCTTTGGTCAGCTGAATTAEST: gi|8286250|gb|BE023809.1|BE023809
genomic: CGTGTCAAGGTATTCCTGATGCTGCTGGGATACGTTCTACTGTGTGGAAGgttaggtttc ... atacttgcagCTTTTGCTTGGATATCTTCCACCAGATCGAGGGCTTTGGTCAGCTGAATTA
EST: GATGCTGCTGGGATACGTTCTACTGTGTGGAAG CTTTTGCTTGGATATCTTCCACCAGATCGAGGGCTTTGGTCAGCTGAATTA
genomic: GATGCTGCTGGGATACGTTCTACTGTGTGGAAGgttaggtttc ... atacttgcagCTTTTGCTTGGATATCTTCCACCAGATCGAGGGCTTTGGTCAGCTGAATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAGGTATTCCTGATGCTGCTGGGATACGTTCTACTGTGTGGAAGgttaggtttccttttcattctgtttttttccctacatttagtctttttttttagagtttaatttccttgcactattactgtagagatttttacattatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG