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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttcttcgttaacgccactctcaatatttgtttattttcgcatcgataaataatcacgtgttgtgttgttcttcttcgctatggttccag

Basic information

species Glycine max
transcript GLYMA08G11740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11740.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G112015_T01 (Zea mays), 5'ss of exon 2
GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtat-cacttcttcgttaacgccactctcaatatt-tgtttattttcgcatcgataaataatcacgtgttgtgttgttcttc--ttcgctatggttccag
|| |||||| ||||||| ||| | |||||||| |||||||| || ||||| || |||||||||||||||| | ||||| | |   | | |  |||    |  || |  | ||| ||       |  | |      ||  | |||  ||  || | | |||| ||||
GCCAATACGCTGCGGTTGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctcttctgcttctgctcgaggctcctcctcctgctgctgttcccagttcaccacgagcgtaacgtggatggtttgtccttttgttctggtaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170368|gb|HO018992.1|HO018992
EST:     TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG                         AACTTTCCGTGTCAAGAAGTCGAAGGGCATAACAAGCCCGAGGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttc ... atggttccagAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
EST: gi|192307232|gb|FK001232.1|FK001232
EST:     TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG                         AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttc ... atggttccagAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
EST: gi|192325005|gb|FK016146.1|FK016146
EST:     TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG                         AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttc ... atggttccagAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
EST: gi|298187154|gb|HO034303.1|HO034303
EST:     TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG                         AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttc ... atggttccagAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
EST: gi|15287594|gb|BI471485.1|BI471485
EST:     TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG                         AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttc ... atggttccagAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC
EST: gi|298177566|gb|HO027233.1|HO027233
EST:     TATACTTGACCTGCATTCGGAACACGCTCGATGCCGCAATGTGCCTCCAG                         AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGATGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcacttc ... atggttccagAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC