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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcag

Basic information

species Glycine max
transcript GLYMA08G09640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcag
||  ||||| |  ||||  | || || ||||| |||||||| ||||| ||||||||||| || || ||||| || ||| |||||||||| |||  |       | |  |||| |  |   ||   ||  | | ||  |  ||  ||||| ||  |||  |   |  |    ||| ||  ||||||  |      |   ||
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgag-------ccagcatttgtgcc-gcttgcattacttagcttctgctaggtgtttgat--ttggtggactgat----caatgtaaatgctctattcctgctcatag

upper sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgt-ttttttggtgcaaagttgatgctcgttctggttttgcag
 ||||||| ||  ||||||||| |||||| || || ||||| ||||| ||||||||||||||||| |||||||||||||| || || || |||  || |  ||    | | | ||  || || ||  |||  | | | ||||| | |||  |||||| |   | || |  |    ||                        
ATTCAATTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGTTAACGGAGgtgggt-ttgtt----tgtctcttgttagtttttgattttgttt-tgtgtatct-tttgttgattggctcgtcttcttctttgtag------------------------

upper sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcag
 ||||| | ||  ||||||||| |||||| || || ||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |||| || |   |      |||  ||     | ||  | |    |  ||| |||  |||   | |   | | | | ||||                              
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttgatttcgtgtgttcatgttgattgattg-attgatttg--gctcatcttgtatctggtag----------------------------

upper sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ23006 (Selaginella moellendorffii), 5'ss of exon 2
GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcag
 | ||| |  | || ||  |     | || || |||||||| |||||||||||||||||||| || || || |||||| |||| ||||| |||  |  || | |   |      ||   |||  | | ||  | |  | |                                                            
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgagattcttccatcttagaactttggattgatctcttcgtttgctag------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611111|gb|DB972699.1|DB972699
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|208092250|gb|GD888909.1|GD888909
EST:     GGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCAATTAGTGAATGGGG                         TTCGGTGTTTTGTTTTTGTCTTCCGTCGG
genomic: GGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCA-TT-GTGAATGGGGgtttgtatca ... ggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGG
EST: gi|192314057|gb|FK008797.1|FK008797
EST:     TTGGACCACACAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG