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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCATCGAGAGACTGAAAGACTACGGCCAAGAAGACGTTTTCGCCCTCTGGTACGAGCTCTCCCCCGAGGAACGCGAGTTTCTCGTCAAGGACATTGAGgtaattttatttccttccgatccaattccatctcttcttctccgccacgaaattcgcctccgattcgagctcggagcttcagattcgcgattcgacttcattgcatttttcgttttcagattgttttgacctcgtagcacgtgatttttgcttctgttttttttttttgtttaattattctgttccgttttgcag

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 5'ss of exon 1
TCTCATCGAGAGACTGAAAGACTACGGCCAAGAAGACGTTTTCGCCCTCTGGTACGAGCTCTCCCCCGAGGAACGCGAGTTTCTCGTCAAGGACATTGAGgt-aattttatttccttccgatccaattccatctcttcttctccgccacgaaattcgcctccgattcgagctcggagcttcagattcgcgattc-gacttcattgcatttttcgttttcagattgttttgacctcgtagcacgtgatttttgcttctgttttttttttttgtttaattattctgttccgttttgcag
 ||  ||||||| || || ||||||||||| || | ||  ||||| |||||| |||||||| |||||||||| ||||| || ||||||  |||||| |||||  |  |   || || | | | |   | |  ||  |  ||  |||      ||          || ||| |   || ||| | | | |  ||  ||||||                                                                                                
GCTGGTCGAGAGGCTCAAGGACTACGGCCAGGAGGGCGCCTTCGCGCTCTGGGACGAGCTCGCCCCCGAGGAGCGCGACTTCCTCGTCCGGGACATCGAGgtcgagatcccttgctcctgctgctgctgctgctgcttctcctcgcgttttgatgttttcttttttagagtttt-agattcggttgctcagttgagacttc------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235209|gb|BE804156.1|BE804156
EST:     GGAACGCGAGTTTCTCGTCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCT
genomic: GGAACGCGAGTTTCTCGTCAAGGACATTGAGgtaattttat ... cgttttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCT