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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTTGAGGGTAACACAGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgattatgttatgaaatgcctaatgcttttgttaatgattaaattactgaacaaaaaaaacatcaatgcttttgcag

Basic information

species Glycine max
transcript GLYMA08G09160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G06430.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGGTTTGAGGGTAACACAGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgattatgttatgaa----atgcctaatgctttt-gttaatgat-taaattactga--acaaaaaaaacatcaatgcttt-tgcag
||| |||||||||||||| ||| | || || ||||| ||||| ||||| || |||||||||||||| || ||| | ||||| || || |||||  | |||||||  |||    ||         || ||    ||||   || ||  | |  ||| |||    |  |       |   || ||  |||||
TGGTTTTGAGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAGgtatatatttgactaaatgccgtgtgtctgtgactttccattgatcctctttattgctggttgcttattgtgtgttgttgtttgatgcag

upper sequence: GLYMA08G09160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
TGGGTTTGAGGGTAACACAGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgattatgttatgaaatgcctaatgcttttgttaatgattaaattactgaacaaaaaaaacatcaatgcttttg--cag
||| ||||| || ||||| ||||| |||||  ||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||||||||   ||   |  ||  | ||  |  ||| ||  |   | |||  || | ||   || |   || | || ||||| |  |||
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagaga-atatattgttttttgcctt-atcttttatt--ataagtgggaaatacttacgttaaagctttggagcag

upper sequence: GLYMA08G09160.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S178_66V6.1 (Physcomitrella patens), 5'ss of exon 3
TGGGTTTGAGGGTAACACAGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgattatgtt-atgaaatgcctaatgcttttgttaatgattaaattactgaacaaaaaaaacatc-aatgcttttgcag----------------------------------------------------------------
||| |||||||||||||||||| | ||||| ||||| || || ||||| ||||| |||||||| || || ||| || |||| || ||||| ||| | |||||   ||  ||  | |     | | |||  || ||||   |        |  |  | |   |     || |||  ||| |                                                                   
TGGATTTGAGGGTAACACAGGTGTTATTGTTGTTGCTGCCACCAACAGAGCTGATATTCTTGATTCAGCTTTGCTGCGACCAGGTCGATTCGATCGCCAGgtcaagaacattctgactttttacataaacctcttgtagctttgccctctgttacagattgatgctttcgaattttttcgtgatgccactagaatcgggaattggatctcctaatttgttggtaacatttacgagtattctgttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688453|gb|BF596129.1|BF596129
EST:     CTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAG                         GTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTT
genomic: CTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgatta ... gcttttgcagGTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTT
EST: gi|151398623|gb|EV268494.1|EV268494
EST:     CTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAG                         GTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTT
genomic: CTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgatta ... gcttttgcagGTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTT
EST: gi|14206236|gb|BG839914.1|BG839914
EST:     CTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAG                         GTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTT
genomic: CTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgatta ... gcttttgcagGTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTT