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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctttttcttccaatgttcaattcacatcgtttatacttttttaccattatttccttctattccaattaatattctaaatcgactaaggaaatg...

Basic information

species Glycine max
transcript GLYMA08G08970.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196807|gb|HO041550.1|HO041550
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193489278|gb|FK454105.1|FK454105
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGAACAAATGATATA
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGA-CAAATGATATA
EST: gi|208181220|gb|GD976759.1|GD976759
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193314076|gb|FK282509.1|FK282509
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTT
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTT
EST: gi|193360337|gb|FK325121.1|FK325121
EST:     CGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: CGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193357112|gb|FK319664.1|FK319664
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATTGGTGAGTTCTT
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGAT-GGTGAGTTCTT
EST: gi|208313216|gb|GE117270.1|GE117270
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193588500|gb|FK539661.1|FK539661
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|31311386|gb|CD396589.1|CD396589
EST:     ACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: ACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|207776200|gb|GD747785.1|GD747785
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGTAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193413864|gb|FK379625.1|FK379625
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|9259040|gb|BE347187.1|BE347187
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193547457|gb|FK501954.1|FK501954
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCC                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|207787552|gb|GD759348.1|GD759348
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|208208241|gb|GE004228.1|GE004228
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAG
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAG
EST: gi|207780749|gb|GD754266.1|GD754266
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAAGTTCTTGGTGAAG
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGA-GTTCTTGGTGAAG
EST: gi|208302626|gb|GE097871.1|GE097871
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGA
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGA
EST: gi|208213331|gb|GE012754.1|GE012754
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193406312|gb|FK370623.1|FK370623
EST:     TACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193334416|gb|FK300908.1|FK300908
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
EST: gi|193666625|gb|FK607658.1|FK607658
EST:     TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCC                         GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC
genomic: TCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctt ... cttgttttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTgtgagttctttttcttccaatgttcaattcacatcgtttatacttttttaccattatttccttctattccaattaatattctaaatcgactaaggaaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT