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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattag

Basic information

species Glycine max
transcript GLYMA08G08030.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtac---gtcgccttactactgtttcccttcccccaaacactgccttttgatttttg----ttcctaat-ttacctttaattaattag------------
||||||||| ||||||||| |  | || |||||||| |||||||||||||| || ||||| || || ||||| ||||| ||||||||||||||||| |||||||   | |   |||    || ||                  |  | || |  ||         |  | | |   || ||  || ||            
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatatatgattatgcagtgttgtgtgtgactctctgttcattagaaacatatggtgtcatgattgatgtatcagtgctatgtgtct

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtac---gtcgccttactactgtttcccttcccccaaacactgccttttgatttttgtt--cctaatttacctttaattaattag----------------------------------------------------------------------------------------------------------------
||||||||| ||||||||| |  | || |||||||| |||||||||||||| || ||||| || || ||||| ||||| ||||||||||||||||| |||||||   | |   |||    || ||                  |  | || |  ||     | ||   |  | | | | |  |||                                                                                                                
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGAAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatatatgattatgcagtgttgtgtgtgactctctgttcattagaaacgtacggtgtcatgattgatgtagcagtgatatgtgtctgtacaatgcatgtggcaataaccatcacgtagttttaattgcatgtggctttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtac---gtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattag---------------------------------------------------------------------------------------------------------
||||||||| ||||||||| |  | || |||||||| |||||||||||||| || ||||| || || ||||| ||||| ||||||||||||||||| ||||||    | |   |||    || || |      |       ||  | |   | ||  ||   ||  ||   |    | ||| |                                                                                                         
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtattgtgacagtttatatgtgattacgcagtgctgtgtg-tgattgtctctcttcattagaaacatatggtgtcatgatttgtgtctgttcaatgcaaacatgtggcaataaccatcatgtagttttaatgtatctgactttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgccttactactgtttcccttcc---cccaaacactgccttttgatttttgttcctaatttacctttaattaattag--------------------------------
|||||| || ||||| ||| |  | |||||||| || || |||||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||| |||||  | | | | | | || | | |||| |      |||   |  ||  |   || | ||  || | |  |||   |   |||                                 
CAAGAAAGGAAAGGATAGCCTTTCTGCTCAGGGGAAGCGTCGTTATGACCGCAAGCAGTCAGGATATGGTGGGCAGACAAAGCCTGTTTTTCACAAGAAGgtttgac-cttgatttctctatgccttgcgaatttaaaggatagctactagcttgt-ttggtagtgttgcttctgtgtgttaatttacttacctctaatatttgttgtcattcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgta------cgtcgccttactactgt--ttcccttcccccaaacactgccttttgat--ttttgttcctaatttac----ctttaattaattag-----------------------------------------------------------
||||||||| ||||| ||| |  | || |||||||| ||||||||||||||||| ||||| || || ||||||||||| |||||||| |||||||| ||||||        |  |  |   | |||  |     |||  ||| |  |    ||||    ||||| | |||   |      ||  || ||| ||                                                            
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgccttactactgtttcccttcccccaaacact-gcc--ttttgatttttgt-------tcctaatttacctttaattaattag----------------------------------------------------------
 |||||||||||||| ||| |  | || |||||||| ||||||||||||||||| ||||| || || ||||| ||||| |||||||| |||||||| ||||||   |  | ||   || |||   |   |  | ||  | | |  |||||||  | |        ||  ||  || ||   | |  | |                                                           
TAAGAAGGGCAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcagcatat--ctatttgattgtacttatacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaatgtgggatatgacaaatgagattgtatttatacctttcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G160351_T03 (Zea mays), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgc---cttactactgtttcccttccc--ccaaacactgccttttgatttttg--ttcctaattta---cctttaattaattag----------
|||||| || ||||| ||| |  | ||||| || || || |||||||||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| |  | |    |  ||||||||| |  | ||    | | ||||     || |||| |  ||| ||||      |||||| ||| ||            
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaacacaaattctctactgtttgcagtaccaattacatactgaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacat

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G160351_T01 (Zea mays), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgc---cttactactgtttcccttccc--ccaaacactgccttttgatttttg--ttcctaattta---cctttaattaattag------------------------------
|||||| || ||||| ||| |  | ||||| || || || |||||||||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| |  | |    |  ||||||||| |  | ||    | | ||||     || |||| |  ||| ||||      |||||| ||| ||                                
CAAGAAAGGTAAGGATAGCCTTTCAGCTCAAGGGAAGCGACGTTATGACCGCAAACAGTCTGGATATGGTGGTCAGACAAAGCCTGTTTTCCACAAGAAGgttcaacacaaattctctactgtttgcagtaccaattacatactgaaggctgcttttggagttcttaatgcggatcctttatttacttgcttcctaacattaactcttcggtctattcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattag--------------------------------------------------------------------
 |||||||||||||| |||||  | || |||||||| || |||||||||||||| ||||| ||  | ||||| ||||| |||||||| |||||||| ||||||   |  | ||   || |||   |   |  | ||  |    | |  |  | ||  |     |  ||  || ||  |                                                                      
TAAGAAGGGCAAGGATAGCATGTCTGCCCAGGGAAAGCGTCGTTATGACCGCAAGCAGTCAGGACATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcaacatat--ctatttgattgtacttatacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggatatgacaaatgtgattgtattaatacctttcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgta-cgtcgccttac---tactgtttcccttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattag----------------------------------------------------------------------------------------------
||||||||| || |||||  | || ||||| ||||| || ||||||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||||||| | | |  |  |    | || ||   ||  |      | |    | |  ||  |     | |  ||  |||||  ||  |                                                                                               
CAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGgtaacattgattatcatgcattgattgttttttcagtttgaattaggtctagttagttgaaatgaggtagttttaaggaaccatttatagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 2
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgta-----cgtcgccttactactgtt----tcccttcc---cccaaacactgccttttg---atttttgttcctaatttacctttaattaat-tag----
||||||||||||||| ||| | ||||| || || || ||  | ||||| ||||||||||| ||||| || || ||||| || || || |||||||||||||||     | ||  || ||| |  |     ||  ||         || | |    | ||   |||||||  | | || ||  || |  |||| ||     
CAAGAAGGGCAAGGATAGCTTAGCCGCACAAGGGAAGCGGAGGTATGATCGCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccctcatctcacttccctcggcatcttttttagatttgaataatctaatctggttatttttgaacatgatctaatttcatgtaatataatgag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttcc-taatttacctttaattaattag------------------------------------------------------------------
|||||| || || || ||| | || || ||||| |||||||| ||||| || |||||||| || || || || ||||| || ||||| |||||||||||||||     || |     |  ||   | |    |||   |  |  ||  |||  |||   | ||     | | |   |||                                                                    
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag

upper sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 5'ss of exon 3
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgc----cttac------tactgtttcccttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattag----------
                                | || ||||| || |||||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||||| ||   |    ||  |      |  | |   | |  |   ||    || |  | ||    ||    |    |     | | |  |             
--------------------------------GCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgcgacagagctggcgcggcatgttatgggcgtatcttgaagtggtgaccgtggaggggtgggggtggggtgaggctgagtgctggcgcagcggatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4287987|gb|AI441268.1|AI441268
EST:     GCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAG                         GCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAG
genomic: GCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgcc ... aattaattagGCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAG