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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaagagtagtgaatactctataaacagctctgttaacttatttgttttgaatttatgcttgatgaatccttgttacatttgcag

Basic information

species Glycine max
transcript GLYMA08G07670.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g00460.t01 (Vitis vinifera), 5'ss of exon 2
GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaagagtagtgaa-tactcta----taaacagctctgttaacttatttgttttgaatttatgcttgatgaatccttgttacatttgcag---
|| |||||  | || ||||||   || ||||| || ||||| |||||||| || ||||| ||||| |||||||||||| |||| ||||||||||||         | |  |  ||||    |  |    ||||  |     ||   |||  |  |   || | | ||||     |   |||   |   
GTACAACTCTTTCGGATTCAATTCAGAGTACCAGAATATGGTTGGACAACACAAAAGGTCTTCCACTTGATGAATTTTATTGTAAATGGATgtaagggttgtctttcatctgttctacttttgtatgcttctgcca-taagttaagtttctacctgc-ctcgctaaatctaaactgtgtttttggcag

upper sequence: GLYMA08G07670.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ30530 (Selaginella moellendorffii), 5'ss of exon 2
GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaagagtagtgaatactctataaacagctctgttaacttatttgttttgaatttatgcttgatgaatccttgttacatttgcag
 | |||||  | || ||  | |   | || || |||||||| ||||| ||||||||||| ||||||||| |||||||  |||| |||||| || ||         |        | |  |  | ||| ||  |||  | |                                        
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgagattcttccatcttagaattttggattgatctcttcgcttgctag----------------------------------------

upper sequence: GLYMA08G07670.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ23006 (Selaginella moellendorffii), 5'ss of exon 2
GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaagagtagtgaatactctataaacagctctgttaacttatttgttttgaatttatgcttgatgaatccttgttacatttgcag
 | |||||  | || ||  | |   | || || |||||||| ||||| ||||||||||| ||||||||| |||||||  |||| |||||| || ||         |       || |  |  | ||| ||   ||  | |                                        
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgagattcttccatcttagaactttggattgatctcttcgtttgctag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307419|gb|FK000761.1|FK000761
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
EST: gi|11275013|gb|BF325337.1|BF325337
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
EST: gi|163926925|gb|EH038506.1|EH038506
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
EST: gi|213601479|gb|DB970409.1|DB970409
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
EST: gi|151393599|gb|EV263474.1|EV263474
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCA
EST: gi|298185371|gb|HO030584.1|HO030584
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
EST: gi|298173449|gb|HO016785.1|HO016785
EST:     GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT                         TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA
genomic: GTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATgtaagtaaga ... acatttgcagTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAA