Sequence
atgc intronic sequence ATGC exonic sequenceCTCTGCATCACCTTTGGTTCTGGAACACAGGCATTCACTCTTGATCATTCAACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTGgtaaaatatgcagtttactttttccatacataatttaaagagtttaatagacatgcattgtcaatgtaagagtcttcacactgtcagcgaatcaaaaatc...
Basic information
species | Glycine max |
transcript | GLYMA08G07200.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G07200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00370.t01 (Vitis vinifera), 5'ss of exon 2
CTCTGCATCACCTTTGGTTCTGGAACACAGGCATTCACTCTTGATCATTCAACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTGgtaaaatatgcagtttactttttccatacataatttaaagagtttaatagacatgcattgtcaatgtaagagtcttcacactgtcagcgaatcaaaaatc------
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CTATGCACCAGTTTTGGTTCAGGGACTCATGCATTCACCCTTGATCATTCAACAGGAGACTTTATTCTCACACATCCAAACATTAAAATTCCTCCACGAGgtattgcatcgatccttttataactagacata--ctaaacaacttgacatgca--cattgtttg-gtaacttccataaccaaattaa-aaactttatatcataataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58021628|gb|CX708369.1|CX708369EST: AACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTG GTCAAATTTATTCAGTAAATGATGCACGATATTTTGACTGGCCTGAAGGTT
genomic: AACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTGgtaaaatatg ... gtgtggtcagGTCAAATTTATTCAGTAAATGATGCACGATATTTTGACTGGCCTGAAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCTGCATCACCTTTGGTTCTGGAACACAGGCATTCACTCTTGATCATTCAACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTGgtaaaatatgcagtttactttttccatacataatttaaagagtttaatagacatgcattgtcaatgtaagagtcttcacactgtcagcgaatcaaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA