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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctccccattcatttttttaacattatattttatcattctgcgttgataaaaacaaatgaatttagggatttccggttattgttgctcacaccatatgcag

Basic information

species Glycine max
transcript GLYMA08G06010.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193362811|gb|FK327441.1|FK327441
EST:     CCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|21888905|gb|BQ742118.1|BQ742118
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|308222667|gb|HO760642.1|HO760642
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|12773394|gb|BG238321.1|BG238321
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|254343946|gb|GR857702.1|GR857702
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|192299227|gb|FG990710.1|FG990710
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAGGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|254315121|gb|GR830114.1|GR830114
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|254324847|gb|GR834272.1|GR834272
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|298196303|gb|HO044694.1|HO044694
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: gi|18730076|gb|BM525667.1|BM525667
EST:     CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG                         GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT