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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgcatccttattataaccaggtccttgacttttttagatagagatattaaactagtgtatcatttttcttgcag

Basic information

species Glycine max
transcript GLYMA08G05700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 2
GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgcatccttattataaccaggtccttgacttttttag---atagagatattaaact-agtgtatcatttttctt-gcag
|| |||||||| ||||| || |||||||||||||| || || ||||| || || ||||||||||| || || ||  ||||  |||| || || ||| |||||| |  || |    ||  |  |  ||  | | || ||| |   ||   | |   |  || | | | |  ||| |||| ||||
GATCTCCATCAGGTAATAAAAGCAAATGATGATCTCACACCAGAGCATCACCAGTTTTTCTTGTATCAGCTGCTCCGGGGAATGAAGTACATTCATGCAGgtagtagattccatatagtaggaaatcggtaatttcttttgcttatgtggttgacacgctcactttctggtttctctttgcag

upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 2
GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgt--attgcatccttattataaccaggtcc-ttgacttttttagatagagatattaaactagtgtatcatttttc--ttgcag
|| || ||||| || || || || ||||||||| | ||||||||||| ||||| ||||||||||| || |||||| | ||  |||| ||| | ||| | |||   || |       |      ||  |   ||  | || | | |||  | |||| ||    |   ||  | ||   ||||||
GATCTTCATCAGGTTATTAAAGCTAATGATGATTTAACTCCTGAGCATCATCAGTTTTTCTTGTATCAGCTTCTTCGTGGTTTGAAGTATGTTCATGCTGgttagtttctaaacagtctctttcacttgtgttatcattatgatataaggttattgaagagctacgtctctgtttgtttgcag

upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G18040.2 (Arabidopsis thaliana), 5'ss of exon 1
GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgt-attgcatccttattataaccaggtccttgacttttttagatagagatattaaa-------ctagtgtatcatttttcttgcag------
|| || || ||||| |||||||| || ||||||||||| ||||||||| | || |||||| | ||||| |||||| | || ||||| |  ||||| |||||  | ||| |     | | ||    ||  ||   ||| |    ||  | | || ||       ||  || |  | |||| |    |      
GATCTTCACCAAGTTATCAAGGCGAACGATGATCTTACACCTGAGCACTACCAGTTTTTCCTCTACCAGCTTCTTCGTGGTCTGAAGTTCATACACACAGgcgagtgccttggcttgagaaattcgtgtttccttttgtccattactgcttttcaaactcaatctgatggaaaacttttttattcgatacag

upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgt---------attgcatcc-ttattataaccaggtcct--tgacttttttagatagagatattaaactagtgtatcatttttc--ttgcag
|| || |||||||| |||||||| ||||||||| | |||||||||||  |||| |||||||||||||| |||||| | || ||||||||| | ||  |||||          ||  |  | ||  | |     | ||||  ||| |||| |        ||||| ||  | |  |   || |    || |||
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag

upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 2
GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgt-attgcatcct-----tattataaccaggtccttgactt--ttttagat----agagatattaaactagtgtatcatt-tttcttgcag
|| || ||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||| |||| || ||||||||||||||||||   ||| |        ||||||| ||    | ||   ||  |||||  |    |  |      ||  |   | | ||  |||||| |||
GATCTTCATCAAGTAATTAAGGCAAACGATGATCTTACTCCCGAGCACTATCAATTTTTCTTGTACCAGCTTCTTCGGGGTCTAAAATATATACATACAGgttggtgcttttcagagatattatagcctcaccgtttgtttgcttttatgtcctgaatggccactaataaaaattttatggtttcttccag