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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcacttcttccatttctcctctttttcttttcattctccaatatgtgtaattgtgtatccatattttag

Basic information

species Glycine max
transcript GLYMA08G05260.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05260.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G80910.1 (Arabidopsis thaliana), 5'ss of exon 3
AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcacttcttccatttctcctctttttcttttcattctccaatatgtgtaattgtgtatccatattttag--------------------
| | ||||| || ||  | ||||| ||||| || ||||| || || ||||| ||||||||||| |||||||| |||||||||||||| ||||| || |       ||  |  |||| | | ||||     |   | | || | |||  |  ||  ||   | |    |                     
ACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGgtacaacattatcaactctttcacttgttttagcaattgatttgcactttgttcatatgcataaaaagaacaaaatttgatttagactttggtag

upper sequence: GLYMA08G05260.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16020.2 (Arabidopsis thaliana), 5'ss of exon 3
AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcacttcttccatttctcctctttt-------tcttttcattctccaatatgtgtaattgtgtatccatattttag------------------------------
| | |||||||| ||  | ||||| || || |||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| || || ||  |      |||| | |||||  | || |       | |||||  |     ||   |   || |||| |    | | ||                               
ACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGgtaaggcattgtcttacttttcttttgttatagcacaatgttttctatgaatgatgcatcctatggtgtcttagcaatgtaaataaacaagatctgatctatacattggcag

upper sequence: GLYMA08G05260.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g06030.t01 (Vitis vinifera), 5'ss of exon 2
AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcacttcttccatttctcctctttttcttttcattctccaatatgtgtaattgtgtatccatattttag---------------------------
|||||| ||||||||  ||||||| ||||| || ||||| || |||||||||||||||||  |  |||| || || ||||| ||||| ||||| || |||| |  | || | |  |  |  | |  ||  | |  |||| ||||  ||  ||   | |  |  || |                             
AATCTTTTCTCCAGAGGCTGCTTGTGAGGTTATAGAAGCAGAGAGGCATTCTCATGTTTTTCATCAGGCTGAGCCAGATATTTGGATGGTCATGgtgcgtt-atctatttcttaacaacaatctcactgatgag-ctccgatattggttgtttgatgtataatttgtcatatcactgatggtctattctatatgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208143303|gb|GD943217.1|GD943217
EST:     GGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATT                         GTGGTCGAGAAATGCAATGATTCTGAACCTATATGGAGGGTTGATGCATTA
genomic: GGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcac ... catattttagGTGGTCGAGAAATGCAATGATTCTGAACCTATATGGAGGGTTGATGCATTA
EST: gi|298179837|gb|HO025052.1|HO025052
EST:     GGCACTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATT                         GTGGTCGAGAAATGCAATGATTCTGAACCTATATGAAGGGTTGATGCATTA
genomic: GGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcac ... catattttagGTGGTCGAGAAATGCAATGATTCTGAACCTATATGGAGGGTTGATGCATTA
EST: gi|6454473|gb|AW185156.1|AW185156
EST:     GGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATT                         GTGGTCGAGAAATGCAATGATTCTGAACCTATATGGAGGGTTGATGCATTA
genomic: GGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcac ... catattttagGTGGTCGAGAAATGCAATGATTCTGAACCTATATGGAGGGTTGATGCATTA