Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTACGTATGGTTGTTAGTACCTATCAGGCTGCTAGTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGgtttggattaaactctctctctctctcgggattttgtgtgaaagaagcactggttttatttatttatggtctttaatcatgattttcttttcttttcttttctttttttttttttgactgaaag
Basic information
species | Glycine max |
transcript | GLYMA08G05250.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G076885_T01 (Zea mays), 5'ss of exon 2
GTGTTACGTATGGTTGTTAGTACCTATCAGGCTGCTAGTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGgtttggattaaactctctctctctctcgggattttgtgtgaaagaagcactggttttatt--tatttatggtctttaatcatgattttcttttcttttcttttctttttttttttttgactgaaag------------------
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GTGTTAAGGATGGTTGTCAGCACATACCAAGCAGCAAGTGGTGCGGGTGCTGCGGCAATGGAAGAACTCAAGCTGCAGACTCAGGAGgtacatatttccttagacaagttgccctatgccatgtccagttaatgtgtttgtttggttacaaacaatgctttacaccccctatgcccatgtccagttattgtgtttgtttggttacacacaatgctttacatcttacttcag
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G14810.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGTTACGTATGGTTGTTAGTACCTATCAGGCTGCTAGTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGgtttggattaaactctctctctctctcgggattttgtgtgaaagaagcactggttttatttatttatggtctttaatcatgattttcttttcttttcttttctttttttttttttgactgaaag
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GTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAGgttttgtttctatttcagccttct---------ttgattgaattgtttaatgattgtgctgagttgtgattctgcttcttcgtcttctttgcattggtgtgttttcttag--------------
upper sequence: GLYMA08G05250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g05860.t01 (Vitis vinifera), 5'ss of exon 2
GTGTTACGTATGGTTGTTAGTACCTATCAGGCTGCTAGTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGgtttggattaaactctctctctctctcgggattttgtgtgaaagaagcactggttttatttatttatggtctttaatcatgattttcttttcttttcttttctttttttttttttgactgaaag
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GTAGTACGCATGGTTGTCAGCACATATCAGGCAGCTAGTGGTGCTGGTGCTGCTGCAATGGAGGAGCTTGAACTGCAAACTCGTGAGgttttctctagtcaacttgtct-tatcttgattttaatcaatctccttgtggaaagctcctctttgtcattatta-ttattatttctttgaaaaattgattctttttcctgttttg-caataagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254332378|gb|GR846423.1|GR846423EST: GTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAG GTGTTGGAAGGAAAACCGCCCACTTGTAAAATATTTAACCGACAG
genomic: GTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGgtttggatta ... tgactgaaagGTGTTGGAAGGAAAACCGCCCACTTGTAAAATATTTAACCGACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTACGTATGGTTGTTAGTACCTATCAGGCTGCTAGTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGgtttggattaaactctctctctctctcgggattttgtgtgaaagaagcactggttttatttatttatggtctttaatcatgattttcttttcttttcttttctttttttttttttgactgaaag
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC