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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct...

Basic information

species Glycine max
transcript GLYMA08G04710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g50440.1 (Oryza sativa), 5'ss of exon 2
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttc--tgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct
||||||||| ||||| ||||| || || ||||| |||||||||||||||||||| || || ||||  |||||||| || ||||| |||||||| |||  |||| | | |        | || |   |  |    | || |     |    |    ||| || |  |  | |||  || | |    | |   ||         
TGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATATATATGCGTTCCTGGACAGGAACTATCATTGGCCCTCCTAATgtatgttgtataacacccattagtagatattaactgcatttgcttctgtatgctcaaactgaatgatcttttacattca-atttgtcttgcag---------

upper sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G090172_T02 (Zea mays), 5'ss of exon 2
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct
||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||| || || |||| ||||||||| || ||||| ||||| || ||   |||| |||       |      ||  |    | |||| | |||   | | |  |  |||    ||| |   |  |||       ||||    | | | |  
TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGATGATGCTGATGACATATATATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAATgtatgctgcagaaatacccatagtga----gataca-taatacattttctttattattttcaaacctgagaggttttactgcgtttat---tttgcag--

upper sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattat-ttttatagaaatttaagagtctacggct
||||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||| || |  |||| ||||||||| || ||||| ||||| || ||    ||| |||       |      |   |    | |||| | ||    |  ||     |||    ||| |   || ||| |  | | |||  |           
TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacagaaatacccataacta----gataca-taatgcatttgttttgttattctcaaacctgagatgtttcactgcatttttcgcag--------

upper sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G23260.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgt-tctttggagaaattctgttacaatgataac-atctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct
|||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| || |||||||| || ||| |||| || |||  |||| |  | ||| | ||  |     | || ||||  |    || |  | ||||  | | |  |||    ||| ||   |      |   ||| |    ||  
TGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCTAATgtatgtatctctctatcgatctctgagttttgttttagatttatctgtgtttgatagagtaaagatgcaatttttaacacttttgtgagagaattgttgg--

upper sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct---
|||||| |||||||||||||| || || || || ||||||||||||||||||||||| |  ||||| || |||||||| || ||| |||| || | |  ||| || |||  | ||||      |  |  |  |    || | | |  |     | | |    |   ||  ||||  ||| | ||  |    | ||  |||   
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgttta-acttaaatgataatatctatggtag-atttgaataaagatgcattt-tttaatgctaaa

upper sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 2
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct---
 || ||||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || |||  ||| || ||||   || ||   | || ||   | | | | || |  || || ||   ||| |   || |      |  ||  |||||| | |  |     |   
GGAAAAGGGAATTGGCGATGGAACTGTCAGTTATGGAATGGATGATGCTGATGATATATACATGCAGTCGTGGACTGGGACTATCATTGGTCCTCCTAATgtgagttttttc-tttttcacacaattttcatgata-taatgaactccttacagg-ttgaatctctcaactagatgttaagaatttatgtggttggtattatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041432|gb|BM309726.1|BM309726
EST:     ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT                         GGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
EST: gi|192319053|gb|FK010617.1|FK010617
EST:     ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT                         GGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
EST: gi|18716865|gb|BM522906.1|BM522906
EST:     ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT                         GGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
EST: gi|193650057|gb|FK597152.1|FK597152
EST:     ATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT                         -ACTGTTCATGAAGGGCGTATATACCAGCTGAAATTATTTTGTGGCAAGGA
genomic: ATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGC-GTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGA
EST: gi|298190494|gb|HO032615.1|HO032615
EST:     ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT                         GGCGTTCATGAATGGCGTATCTACCAGCTGAAATTATTTTGTGGCAATGAT
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT