1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAAGGGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactgaggcattgagggaaataaataatttattaatcttttaatgcaaagcgcgtttctagcttaaatagattaaaaattagcttcttttgcagatattctgttttcgatttgaggttatttggtttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcag
species | Glycine max |
transcript | GLYMA08G04460.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTTGCGCTG GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGAEST: gi|7924914|gb|AW830940.1|AW830940
genomic: GTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTT-GCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGA
EST: GGTCAAATGCGTACTGGTTGATAGTAGCTCGCCTCGTGCCTTTTGCGCTG GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCEST: gi|13562624|gb|BG550844.1|BG550844
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTG GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCEST: gi|209704856|gb|BW673467.1|BW673467
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: GTCAAATGCGTACTGGTTGATAGTAGCTCGCCTC-ATGCCTTTTGCGCTG GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCEST: gi|298170101|gb|HO018725.1|HO018725
genomic: GTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGA-GCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTG GTATGGATATTAAAGGGGTTGTCGCTGAAATACAAAAGGACAAAAACACTCEST: gi|209726516|gb|BW658083.1|BW658083
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTG GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAAGGGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactgaggcattgagggaaataaataatttattaatcttttaatgcaaagcgcgtttctagcttaaatagattaaaaattagcttcttttgcagatattctgttttcgatttgaggttatttggtttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC