Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACAgtaagtacttacaatctttttgcttatggtattattgttaaaatgtcttggctttgaggattgataaatagatattctttaaggtgctttggaaacccac...

Basic information

species Glycine max
transcript GLYMA08G04420.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04420.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G043056_T01 (Zea mays), 5'ss of exon 3
GGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACAgtaagtactt------acaatctttttgctta--tggtattattgttaaaat--gtcttggctttgaggattgataaatagatattctttaaggtgctttggaaacccac---------------------------------------------------
|||||||||||||| ||| ||||||||||||| |||||||| |  || || || |||  |||||||||| ||       |  ||||||   |||       |  || |  |  |     ||   ||||   |   ||| ||  ||||       | ||   || |    | |                                                   
GGACCACAATATGTCTGCACAAATTTCTGGACCTTTGTTTGTACCAATTGCAGTGGATCACAgtaagtattttagggagccctcttttactttagtcaacctatttatcgagcttcactttctttttgtttaacaatatatcaatatatgccttgatggaatgaactgtccccaagggaaatacgttggttttttcctaatatagatcactttatttttctag

upper sequence: GLYMA08G04420.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G13350.2 (Arabidopsis thaliana), 5'ss of exon 3
GGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACAgtaagtacttacaatctttttgcttatggtattattgttaaaatgtcttggctttgaggattgataaatagatattctttaaggtgctttggaaacccac
|||||||||||||||||| | | ||||||||| |||||||| |  ||||| || |||||||||| |||   |||  | | ||  | |||  |  | | | |    |   ||||   ||  | |||| | ||  ||||   ||   |  |             
GGACCACAATATGTTTGCACTACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACAgtgagtg--tactttatcttctcatattcttgtgtagatggtgttcattggaaatgttgtttgagatatgcatatgtatttttgaacag-----------