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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATTCTAATCCTTTGCAAAACAATCCTGCTTACTCAGTTGTCAAgtaagtttcatatctacatatatttcttccttcttcttcttactttttgccttctatgtttgtctcatattaatttaaatatactttccacttctcag

Basic information

species Glycine max
transcript GLYMA08G03570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 2
ACATATTCTAATCCTTTGCAAAACAATCCTGCTTACTCAGTTGTCAAgtaagtt---tcatatctacatatatttcttccttcttcttcttacttt----ttgccttctatg---tttgtctcatattaat-ttaaatatacttt-ccacttctcag---------------------
|| |||   |||||||||||| | |||||||| ||||||||||| |||||||||   |    |   |  |   ||||  | | || || || |  |    ||   | || ||   | ||  ||  |||||| || | || | |||   | |  |||                      
ACCTATCACAATCCTTTGCAAGATAATCCTGCATACTCAGTTGTTAAgtaagttgatttgggttctctaacccttctagcatatttttgtttcagtgcagttaagtgctgtgacatatgcttctgattaatattgattagaatttattattcatcaaagtaatgttgggtttttccag