Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCCCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaagtgttaacaattcaacatcttctttctcaattaatttagtttaatttaatgaggctgcttgttctggagtccaatttgcattataaattatttatggattgggccattagattaattaacctttagcagcttcatgttttgaatacttttttggaattaactcataatatgtggtggggtttgttcag

Basic information

species Glycine max
transcript GLYMA08G02840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02840.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T02 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCCCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaagtgttaacaattcaacatcttctttctcaattaatttagtttaatttaatgaggctgcttgttctgg-agtccaatttgcattataa-attatttatggattgggccattagattaattaacctttagcagcttcatgttttgaatacttttttggaattaactcataatatgtggtggggtttgttcag
    | |||| | ||||| ||||||||  ||||||| |  || ||  ||||||| ||||| |||||||| ||||| ||||| ||||| || ||||||||||||    | ||   ||| ||   || |  |||     | |   ||  |||||   | || |   |  ||  ||    ||||  ||    || ||   || ||||  | ||       ||  | | ||   | | | |   ||  || |    || |       |||| |  |||||  | | |||   |       |||
----CGTCCA-GGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGGTG----AGgtccaaactat---acctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatgattccatcatttcagcatctttatctttcaatcat--gcttgtggttactaaatata--aaaaaagaagggggaaatttctcatcgtctatgggacga---acgcag

upper sequence: GLYMA08G02840.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 2
TCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCCCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaagtgttaacaattcaacatcttctttctcaattaatttagtttaatttaatgaggctgcttgttctgg-agtccaatttgcattataa-attatttatggattgggccattagattaattaacctttagcagcttcatgttttgaatacttttttggaattaactcataatatgtggtggggtttgttcag
 |||||  |  | ||||| ||||||||  ||||||| |  || ||  ||||||| ||||| |||||||| ||||| ||||| ||||| || ||||||||||||    | ||   ||| ||   || |  |||     | |   ||  |||||   | || |   |  ||  ||    ||||  ||    || ||   || ||||  | ||       ||  | | ||   | | | |   ||  || |    || |       |||| |  |||||  | | |||   |       |||
GCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAGgtg----aggtccaaactat---acctactctactctactcttttgtgtttatcatcatcatcattattactcgatcagtcgtatgcatatgattccatcatttcagcatctttatctttcaatcat--gcttgtggttactaaatata--aaaaaagaagggggaaatttctcatcgtctatgggacga---acgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208080695|gb|GD875049.1|GD875049
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|58023594|gb|CX710335.1|CX710335
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207721092|gb|GD703633.1|GD703633
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193522381|gb|FK479916.1|FK479916
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGT
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGT
EST: gi|193375623|gb|FK340462.1|FK340462
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207749632|gb|GD721890.1|GD721890
EST:     ACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTG
genomic: ACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTG
EST: gi|16347749|gb|BI973344.1|BI973344
EST:     CCCTTTTCCTTTACAACTATTCCACTCTCCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|192321583|gb|FK012919.1|FK012919
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|298177553|gb|HO027220.1|HO027220
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|254342776|gb|GR858938.1|GR858938
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193360097|gb|FK327233.1|FK327233
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATCGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193447072|gb|FK416277.1|FK416277
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193548576|gb|FK505009.1|FK505009
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCGAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|192321582|gb|FK012918.1|FK012918
EST:     CTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193329103|gb|FK293107.1|FK293107
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|151413104|gb|EV282912.1|EV282912
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|298172286|gb|HO021878.1|HO021878
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|192323930|gb|FK018651.1|FK018651
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193672410|gb|FK618514.1|FK618514
EST:     TTTTTCCCTTTTGCAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: -TTTT-CC-TTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193685784|gb|FK626298.1|FK626298
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCTATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|151406616|gb|EV276431.1|EV276431
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAT
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193324470|gb|FK289642.1|FK289642
EST:     CTTTTCCTTTTACTAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CTTTTCC-TTTAC-AACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208240854|gb|GE036856.1|GE036856
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208179143|gb|GD974504.1|GD974504
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GTTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|120496114|gb|EH224281.1|EH224281
EST:     CATGGAATCTTTGAG                         GCTGCAATTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|298171052|gb|HO016084.1|HO016084
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208190142|gb|GD994486.1|GD994486
EST:     C-TTTCCTTTACAACTATTCCACTCTACCTAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CTTTTCCTTTACAACTATTCCACTC-ACC-AACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208275283|gb|GE068103.1|GE068103
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCGAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208289087|gb|GE085408.1|GE085408
EST:     CCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAGGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|6455600|gb|AW186283.1|AW186283
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193340918|gb|FK307195.1|FK307195
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTAATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193718263|gb|FK653071.1|FK653071
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTC
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTC
EST: gi|208131536|gb|GD931611.1|GD931611
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTAGGAAGGGTCAAATATTGATCCATCAGCTTGGGAGGATA
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTT-GG-AGGGTCAAATATTGATCCATCAGCTTGGGAGGATA
EST: gi|207695662|gb|GD677185.1|GD677185
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207848662|gb|GD818427.1|GD818427
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|16995947|gb|BM085319.1|BM085319
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193390755|gb|FK355513.1|FK355513
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193328248|gb|FK294269.1|FK294269
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193371017|gb|FK335354.1|FK335354
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193699523|gb|FK639866.1|FK639866
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAA
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGAT-AA
EST: gi|193698364|gb|FK638987.1|FK638987
EST:     CCTTTTCCTTTACTAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCTTTTCCTTTAC-AACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|58019956|gb|CX706698.1|CX706698
EST:     TTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: TTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193417593|gb|FK385077.1|FK385077
EST:     TTTTCCTTTTACTAACTTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: TTTTCC-TTTAC-AAC-TATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|254313599|gb|GR831228.1|GR831228
EST:     CCCTTTTCCTTTACA-CTATTCCACTCACCAACTCCATGGAATCTTTGAG                         -CTGCAAGTTTTGGAGGGTCAAATATTGAT
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGAT
EST: gi|193484010|gb|FK452413.1|FK452413
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTCGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193729413|gb|FK667299.1|FK667299
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207844159|gb|GD817410.1|GD817410
EST:     TTTTCCTTTTACTAACTTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: TTTTCC-TTTAC-AAC-TATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|23726186|gb|BU761077.1|BU761077
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|151394694|gb|EV264565.1|EV264565
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaag ... gtttgttcagGCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCCCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAGgtgtgttaagtgttaacaattcaacatcttctttctcaattaatttagtttaatttaatgaggctgcttgttctggagtccaatttgcattataaattatttatggattgggccattagattaattaacctttagcagcttcatgttttgaatacttttttggaattaactcataatatgtggtggggtttgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA