1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCTGCTAGTGGTGAACTTGGTCACGCCATGGAAGCCGTTAAGTGGGGTACGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttattttcttattttaattttaatacaatgttttattcctagttgaatttagatgctattacaccaagtagtaatttatttatgaataaagaatgtcgttggtgttgtgacaattag
species | Glycine max |
transcript | GLYMA08G02610.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGEST: gi|209709618|gb|BW661945.1|BW661945
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGEST: gi|213591044|gb|DB973785.1|DB973785
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGAATGG-AACACTGACCATTACTGTTGGCAAEST: gi|209712791|gb|BW681647.1|BW681647
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGA-TGGGAACACTGACCATTACTGTTGGCAA
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCCAGAG-ACATEST: gi|14205538|gb|BG839216.1|BG839216
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACC-AGAGGACAT
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGEST: gi|213617200|gb|DB963763.1|DB963763
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGEST: gi|209729310|gb|BW660356.1|BW660356
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGEST: gi|209718838|gb|BW669025.1|BW669025
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCEST: gi|213593138|gb|DB966075.1|DB966075
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGC
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGEST: gi|20449462|gb|BQ253586.1|BQ253586
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG GTGGGAGATGGGAAC
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGCTAGTGGTGAACTTGGTCACGCCATGGAAGCCGTTAAGTGGGGTACGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttattttcttattttaattttaatacaatgttttattcctagttgaatttagatgctattacaccaagtagtaatttatttatgaataaagaatgtcgttggtgttgtgacaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA