1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctacataactctctctactcagttttttggttttttttgtctcttgtgagttcgaaatttgttaggtcttctcgtcctttgatatcagttga...
species | Glycine max |
transcript | GLYMA08G02420.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|207720108|gb|GD702607.1|GD702607
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|13252165|gb|BG363068.1|BG363068
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|207731166|gb|GD706597.1|GD706597
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|208182348|gb|GD980683.1|GD980683
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|6455236|gb|AW185919.1|AW185919
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|208052664|gb|GD849987.1|GD849987
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCNGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|193535711|gb|FK492647.1|FK492647
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|208225425|gb|GE025424.1|GE025424
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|7639786|gb|AW734101.1|AW734101
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|193378853|gb|FK345194.1|FK345194
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAEST: gi|5605982|gb|AI900080.1|AI900080
genomic: AGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
EST: GGGCA-GAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT TGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
genomic: GG-CAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctacataactctctctactcagttttttggttttttttgtctcttgtgagttcgaaatttgttaggtcttctcgtcctttgatatcagttga
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc