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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctatataactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcatctcgtccgttgacatcgattaaaattaaattc...

Basic information

species Glycine max
transcript GLYMA08G02390.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02390.3 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 2
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgta--acttc---ctatataactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcatctcgtccgttgacatcgattaaaattaaattc
| |||||||| |||||||| ||  | |||||||| || || |||||||||||||||||||| ||||| ||||||   ||||||||| || | ||||| ||||   |||||      |  || | | |||  | |  | | || ||  | ||    |  ||  | | |  |||| | |    ||      |  || | |  |    
AGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAATgtgagacttcgattcctcaaattatttatgttttcctgtgttctccgtatggtcccattaacagc-atttcatgttgaggatttctgcagcatacagtaca----

upper sequence: GLYMA08G02390.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 2
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctatataactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcatctcgt-ccgttgacatcgattaaaattaaattc
||||||| || |||||| ||||| | |||||||| || || ||||||||||||||||| || ||||||||||||   || || ||| | |||||||| ||||||      |  |  |    |    ||   |      |   |   |||  | || |  |||    || |  |    ||| |||  | |  | || |  | 
AATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAATgtaagacttcaattctccgaattcgttcacctcaaggataaatagtagtctgttagttgctatcaaatatgatgttcttgccatgaaatgcatttcatgt-

upper sequence: GLYMA08G02390.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 2
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaa--cttcctatataactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcatctcgtccgttgacatcgattaaaattaaattc-
||||||| || |||||||||||| | |||||||| || || |||||||| || ||||| || ||||||||||||   || || ||| | || ||||| ||||||  ||||   | ||    | | | | | | ||   |    | || |  | |  ||  | || |   ||    || |  |   |  ||    || |     
AATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAATgtaagacttcaattctatgaatttgttcacctcttcgataaa-cagtaa--ttgccatggaatatgatgtcgttgccatgaaatgcatttcgtgttgagaatg

upper sequence: GLYMA08G02390.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G078839_T01 (Zea mays), 5'ss of exon 2
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctata-taactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcat-ctcgtccgttgacatcgattaaaattaaattc
| ||| | || || ||| ||||| |||| ||||| |||||||||||||||||||| ||||| || || ||||||   ||||| |  ||    ||||| |||||| |  |  |  |||||   | || | || |  ||  | |   |   |||  | ||| ||| ||||  ||     | |   || |  || |      |  
AGTTCCAAATAGAAAAGTTGCAGCTGGTGGAAGCTGAAAAGAAGAAGATCAGGCAGGAATATGACCGGAAAGAGAAGCAAGTTGGCATCAAGAAGAAAATgtaaatagcagttctaacttaatttcttattctcattcttgtgacttgtttctgttttacctatgtcacacttcatagctactattgtctacaggccgtt--

upper sequence: GLYMA08G02390.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 2
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctatataactctctatcctctttttttttgtctctgtgagttcgatatta-actaggtcatctcgtccgttgacatcgattaaaattaaattc
||||||| || |||||| ||||| | |||||||| || |||||||||||||| || ||||| || || ||||||   ||||| || ||||| ||||| |||||| || ||  |  |    || |  | | |||     | |  ||||   |  | | | | | |||    |  |  | |   | | ||  |  |   ||  
AATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATCAGACAGGAATATGAGCGAAAAGAGAAGCAAGTTGATATTCGGAAGAAAATgtaaattactgaactatgtact-tgatttctttggcatttttggtgatcacattgtgagaattggtttgttgttaagctctaagctatggatttctgatca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493334|gb|EH221501.1|EH221501
EST:     AGGCAAGAATACGAACGCAAAGATCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|18848551|gb|BM567727.1|BM567727
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|23729135|gb|BU762653.1|BU762653
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|10842860|gb|BF066209.1|BF066209
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|12496453|gb|BG047072.1|BG047072
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|209729716|gb|BW669816.1|BW669816
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|213592584|gb|DB961844.1|DB961844
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|6341379|gb|AW164203.1|AW164203
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|19269876|gb|BM886132.1|BM886132
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|17022073|gb|BM093107.1|BM093107
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|213595223|gb|DB962362.1|DB962362
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|193696729|gb|FK638389.1|FK638389
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATACAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|254344832|gb|GR855596.1|GR855596
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|26269429|gb|CA820492.1|CA820492
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|207787700|gb|GD761050.1|GD761050
EST:     AGGCAAGAATACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|298184815|gb|HO030028.1|HO030028
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|193551030|gb|FK507927.1|FK507927
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|151393563|gb|EV263438.1|EV263438
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|26048381|gb|CA784877.1|CA784877
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAATATTTT                         TGAGNACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|209720326|gb|BW669273.1|BW669273
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|208273361|gb|GE066713.1|GE066713
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|193563974|gb|FK520463.1|FK520463
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|26047921|gb|CA784561.1|CA784561
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|19453218|gb|BM954628.1|BM954628
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|19934634|gb|BQ079664.1|BQ079664
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|298198695|gb|HO042058.1|HO042058
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|27809414|gb|CB063836.1|CB063836
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|22522158|gb|BU080969.1|BU080969
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|19269962|gb|BM886218.1|BM886218
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|208103778|gb|GD908109.1|GD908109
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCCCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|19935254|gb|BQ080284.1|BQ080284
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|298181349|gb|HO022788.1|HO022788
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGGAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|208147392|gb|GD945325.1|GD945325
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192317055|gb|FK007836.1|FK007836
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|298177899|gb|HO021924.1|HO021924
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192329834|gb|FK023016.1|FK023016
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCAGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192327864|gb|FK022437.1|FK022437
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192331491|gb|FK022738.1|FK022738
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCAGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|209716815|gb|BW682257.1|BW682257
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192317054|gb|FK007835.1|FK007835
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192316066|gb|FK008891.1|FK008891
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|193416471|gb|FK384963.1|FK384963
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|193344232|gb|FK313644.1|FK313644
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|8827772|gb|BE211502.1|BE211502
EST:     GTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: GTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|209726264|gb|BW680201.1|BW680201
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|23728894|gb|BU762516.1|BU762516
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192316067|gb|FK008892.1|FK008892
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|8669868|gb|BE190975.1|BE190975
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|298169479|gb|HO020839.1|HO020839
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|33387695|gb|CA850902.1|CA850902
EST:     AGGCAAGAATACGAACGCNAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|207736783|gb|GD710366.1|GD710366
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|22522604|gb|BU081415.1|BU081415
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|298163744|gb|HO012477.1|HO012477
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|7686055|gb|AW756703.1|AW756703
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|208162436|gb|GD963153.1|GD963153
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|192304325|gb|FG996451.1|FG996451
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|10236269|gb|BE805157.1|BE805157
EST:     AGGCAAGAATACGAACGCGAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|20812625|gb|BQ297103.1|BQ297103
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|208165733|gb|GD959465.1|GD959465
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
EST: gi|193710836|gb|FK646903.1|FK646903
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCT
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCT
EST: gi|7234524|gb|AW569861.1|AW569861
EST:     AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGAT                         TGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA
genomic: AGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcct ... tttgttgcagTGAGTACTCAATGCAGCTGAATGCTTCTCGGATTAAAGTTCTTCAAGCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATgtaacttcctatataactctctatcctctttttttttgtctctgtgagttcgatattaactaggtcatctcgtccgttgacatcgattaaaattaaattc

- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG