1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGAGAAAATGACCGAGGTGTGTCATTTACATTTGGGGCTGATAAGGTTGCTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAGgtaatgaaacctgaagtttggtcaatttctatgattttattgctcctattggattgtgatcatctgtggctataggtagtatctttcatggtttgtactt...
species | Glycine max |
transcript | GLYMA08G02180.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGAGTTTCTTGAACGTCATGATCTCGATCTGATTTGCCGAGCTCACCAG GTTGTAGAGGATGGATACGAGNNNNNNNGCCAAGCGTCAGCTAGTGACTATEST: gi|33390031|gb|CA853238.1|CA853238
genomic: CTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAGgtaatgaaac ... ctttgtatagGTTGTAGAGGATGGATACGAGTTTTTT-GCCAAGCGTCAGCTAGTGACTAT
EST: CTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAG GTTGTAGAGGATGGATACGAGTTTTTTGCCAAGCGTCAGCTAGTGACTATAEST: gi|4396437|gb|AI495434.1|AI495434
genomic: CTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAGgtaatgaaac ... ctttgtatagGTTGTAGAGGATGGATACGAGTTTTTTGCCAAGCGTCAGCTAGTGACTATA
EST: CTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAG GTTGTAGAGGATGEST: gi|193681368|gb|FK624476.1|FK624476
genomic: CTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAGgtaatgaaac ... ctttgtatagGTTGTAGAGGATG
EST: GCCGAGCTCACCAG GTTGTAGAGGATGGATACGAGTTTTTTGCCAAGCGTCAGCTAGTGACTATA
genomic: GCCGAGCTCACCAGgtaatgaaac ... ctttgtatagGTTGTAGAGGATGGATACGAGTTTTTTGCCAAGCGTCAGCTAGTGACTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGAAAATGACCGAGGTGTGTCATTTACATTTGGGGCTGATAAGGTTGCTGAGTTTCTTGAACATCATGATCTCGATCTGATTTGCCGAGCTCACCAGgtaatgaaacctgaagtttggtcaatttctatgattttattgctcctattggattgtgatcatctgtggctataggtagtatctttcatggtttgtactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA