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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTGCAATATGTAATTTAATTTTCTATTGTTCCATTTATAGTGCACCATGTGTGTCTTACCTTCTTCGCAAACGAGCTCTCTATGATGATATGTCAAGgtaattgatactatttctgttttcccaagattccaaaatgatttacatagtctgtatgtgtgatatatctgtcgtataatttgttccag

Basic information

species Glycine max
transcript GLYMA08G01990.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01990.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g00130.t01 (Vitis vinifera), 5'ss of exon 3
TTTCTGCAATATGTAATTTAATTTTCTATTGTTCCATTTATAGTGCACCATGTGTGTCTTACCTTCTTCGCAAACGAGCTCTCTATGATGATATGTCAAGgtaattgatactatttctgttttcccaagattccaaaatgatttacatagtctgtatgtgtgatatatctgtcgtataatttgttc-cag
                                           ||||||||||||||| ||| | ||||||||| ||||||| ||| |||||||||||||||||| | | || |   | |       |  |    |  | |  |  || |  |||  |||| | |||| |||    | || | | |  ||
-------------------------------------------TGCACCATGTGTGTCATACTTGCTTCGCAAAAGAGCTCTTTATAATGATATGTCAAGgtaataggtgctctccatttcccttggaagtcttgatgtcaactgaattga-tgtcggtgtaa-atat-tgtttcctcatgtctgcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282960|gb|BE020521.1|BE020521
EST:     GTGTGTCTTACCATGTTCGCAAACGAGCTCTCTATGATGATATGTACAAG                         -TACACATGTTGAGCTGGCTACGTGCCTTGCAG
genomic: GTGTGTCTTACCTTCTTCGCAAACGAGCTCTCTATGATGATATGT-CAAGgtaattgata ... tttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAG
EST: gi|192308244|gb|FK002756.1|FK002756
EST:     TGTGTGTC-TA-CTT-TTCGCAAACGAGCTCTCTATGATGATATGTCAAG                         GTACACATGTTGTGCTGGCTACATG-CTTGCAGTGGTAGGTGTGGAGAGAG
genomic: TGTGTGTCTTACCTTCTTCGCAAACGAGCTCTCTATGATGATATGTCAAGgtaattgata ... tttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAGTGGTAGGTGTGGAGAAAG