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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag

Basic information

species Glycine max
transcript GLYMA08G01940.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 3
GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag
|||| ||||| || || || ||  | |||||||| |||||||| || ||||| || ||||| || || ||||| ||||  ||||||||||||||||| |||| ||  | ||  |||     |    ||  | |||| ||||    |    || | ||      |  |  ||||      | | |  |     ||| |                                                        
GTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgag--gatttgatgtccatacccttttctggaatgattgaagcttgtgtaatcaattgttgctgacctgcttttgttggacttga--aaatgtag--------------------------------------------------------

upper sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 3
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag
||||||||||  |||| || || || |||||||| ||||||||||| ||||||||| |||| ||  | | |||||| | ||| |||||||| ||||| |||| ||||   || |  |||   ||| |   ||| |  | || |||| |    | |    | |   | |       ||  |     |||      ||| |       || |||                                         
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcag---tagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttg----ttatccctctttgtatgtggttat-gcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294461|gb|FG987390.1|FG987390
EST:     CCATCTATTGGCCTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGAT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtt ... ttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
EST: gi|298163300|gb|HO012033.1|HO012033
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGAT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtt ... ttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT