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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAATGCAGGGGTGATGGCAACTCCATTCACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatgttacatgtttacctcacataatttgtgtgatttctctggcctcatttctgcaacatgtctttctaaactgaaagttgttattctctaataatatacaaaatcacactgaaggttaataatttaatactattttgtag

Basic information

species Glycine max
transcript GLYMA08G01870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01870.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 2
TAACAATGCAGGGGTGATGGCAACTCCATTCACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatgttacatgtttacctcacataatttgtgtgatttctctggcctcatttctgcaacatgtctttctaaactgaaagttgttattctctaataatatacaaaatcacactgaaggttaataatttaatactattttgtag
 |||||||||||||||||||||||||| ||| | || ||  | ||   ||| || ||||| || || || || ||| | ||||| |  || ||||      | |||    ||       |||||     | | | || |    |||          |         |||||| ||| ||  ||                                          
CAACAATGCAGGGGTGATGGCAACTCCTTTCTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAACCATGTTGgtatgaactt-catgcaccggttacactgatttaaaagcttctca---ttaactactacgtagtgttgcaaatgtttttccagccatattctttaagaa-gtaag----------------------------------------

upper sequence: GLYMA08G01870.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G11410.1 (Arabidopsis thaliana), 5'ss of exon 3
TAACAATGCAGGGGTGATGGCAACTCCATTCACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtat-tatgttacatgtttacctcacataatttgtgtgatttctctggcctcatttctgcaacatgtctttctaaactgaaagttgttattctctaataatatacaaaatcacactgaaggttaataatttaatactattttgtag
 || ||||| ||| | ||||||  ||| |||  ||||||    ||||| |||||||| ||||| |||||||||||||| ||||| | |  |  |     || |   || || |      ||| |   || || ||  |  ||| | |  |||     |  ||||  | ||     |  || ||     ||   |   |||||| ||  |||  ||| ||  |  ||
CAATAATGCGGGGATTATGGCATGTCCCTTCTTGCTTTCTAGCGACAACATTGAATTACAGTTTGCAACCAATCATTTGGgtatgtttagtttagaagaactt---atgatctcctcccttttt---gcttctttgtttgaacttttgcttcatcgtttgaagt-atgatg----aggaacattttctatgttat--aaggtttatgttttg-tacaatgcttcag

upper sequence: GLYMA08G01870.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g03380.t01 (Vitis vinifera), 5'ss of exon 3
TAACAATGCAGGGGTGATGGCAACTCCATTCACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatgttacatgtttacctcacataatttgtgtgatttctctggcctcatttctgcaacatgtctttctaaactgaaagttgttattctctaataatatacaaaatcacactgaaggttaataatttaatactattttgtag
||||||||||||||| ||||| |||||||||  ||||||||| ||||| || ||  ||||||| |||||||| |||||||||||  |         ||  || |||  | |||| |    | | |   ||  ||  || || |      | ||  |   | |  |  |   || || |   |                                           
TAACAATGCAGGGGTTATGGCCACTCCATTCCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttcattgaagttttctgacagtagttgt-tataatatgtaaacttcttggtggaaaaaaaaaatttattc---atggggagagggtcgaacagcttct-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181412|gb|BG352682.1|BG352682
EST:     CACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTGTTAGAAACTATGNNNNNNNCAGTAC
genomic: CACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatgtt ... tattttgtagGCCATTTTCTCTTGACAAACCTTTTGTTAGAAACTATGAAAAAAACAGTAC
EST: gi|13789180|gb|BG651771.1|BG651771
EST:     CACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTGTTAGAAACTATGNNNNNNNCAGTAC
genomic: CACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatgtt ... tattttgtagGCCATTTTCTCTTGACAAACCTTTTGTTAGAAACTATGAAAAAAACAGTAC
EST: gi|208273474|gb|GE066770.1|GE066770
EST:     CACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTTCTTGACAAACCTTTT
genomic: CACGCTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatgtt ... tattttgtagGCCATTTTCT-CTTGACAAACCTTTT