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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag

Basic information

species Glycine max
transcript GLYMA08G01860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g44630.2 (Oryza sativa), 5'ss of exon 3
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgat-gctatgatataataattgtag
||| || ||||| ||||||||||||||||| ||  | || ||||||||||| ||||| ||||||||||||||||| || || || ||||| || ||||||||| |||| |||  ||  |      ||||    | ||      || ||   |  ||  | | | |  ||| |     ||   | |||| | | |   | ||  | |                 
TGACGGTCTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGATGCCAAGAGGAATGCCAGGGACTCACATGTTCCTgtaagtatccttctccttt------ttgcagtgtgatatgtgaaagttcagtagtagttag-tgtggtctaatgagttatgcactgtgataactaattcatcaccaa----------------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g47220.1 (Oryza sativa), 5'ss of exon 1
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag
 || || || || || ||||| || ||||| ||  | || ||||||||||| ||||| ||||| || |||||||| ||||| || ||||| |||||||| ||  |||| |   |  |||||   | |    |||||       || |   ||||       || | |||||| |   | |||  |||  ||||| |  |  | | |   | |          
CGACGGCCTCGGCGCCGAGATCGTCGGCACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCGgttagtataccaact-actactgcagtaaagattcagagatggaagtattttta-------ctgttttctgagtgattgatttttgtt-ttaatttgcg-cgatcttccacag---------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag
|||||| ||||| ||||||||||||||||| ||  | || ||||||||||| ||||| ||||| ||||||||||| || || || ||||| || ||||||||| ||| ||||  ||||| |  | || ||  ||  |||   |  | | |||  |   ||| | || | || ||| | |   |     || | || || |   |                  
TGATGGCCTTGGCGCTGAGATTGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCAGCCACCGATGCCAAGAGGAATGCCAGGGACTCCCATGTTCCTgtaagtactctt--ccacttcccttttcctagtttgttcagttgttatagttc-tgcttggat-tagtttggcttagcacacatatatgtaattgaatcaactt------------------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G392975_T03 (Zea mays), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactt-tgtaattaatgtggttaatgtatgatgctatgatataataattgtag
 || || ||||| || ||||| |||||||| ||  | || ||||||||||| ||||| ||||| ||||||||||| ||||| || ||||| || || || ||| ||| ||||   |  | |  | || ||  ||  |||  ||  |  ||||      ||  |  ||||  | ||   ||  |||       ||| || ||||    | | |||         
GGACGGCCTTGGCGCAGAGATCGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactcttcgtcctttcgtt-ttcctagtttgttcagctgttagggttc-----tgcttgaattcacatttgcatatctaa-------aatataagatgacg-gttgtaa---------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgct-------tattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag
 ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||| || || |||||| ||||| |  | || |  |  ||  ||       ||| |||     |  |||| |||||| ||  ||| | | ||  |   ||  ||| | | || |  | |                        
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagat--cta-actttg--tcaataggtaaagcgattgagttct------------------------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g03390.t01 (Vitis vinifera), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggttt-ataa-atggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag
|||||| ||||| ||||||||||||||||| || |||||||| ||||| || |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |   | | |  | |  |   |||||   || |   | |||| |||  |||  | || | |  | ||| |||     |  ||  | | |     |                  
TGATGGCCTTGGTGCTGAGATTGTTGGCACCTTCGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAGAGAAACGCCAGAGACTCTCACGTCCCTgtatgtattctctt--atttc--tttctcaacttcatgagaccatccttgtttcatattatgattttacttt--ccttggaatcttattttttgttttttctcatt------------------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02410.t01 (Vitis vinifera), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag
|| ||| ||||| |||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |||||||| || ||||| ||| ||||||| || |  |  |    | | ||   ||     |  | |  |  |||  | | |||||  |   ||   ||||  |   || | ||                           
TGCTGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattctctctctgtgtatatatacataaatatgtgggttttgttttacatatctagttatatatttctttgtcaattggtaaagtgattgagctg----------------------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S305_12V6.1 (Physcomitrella patens), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag
 || || || ||||| |||||||| ||||| || || || || |||||||| || |||||||| ||||||||  |||||||  | || ||||||||||||||  |||      |||||| || | |||   ||    |  |       |||| |   |  |||  |||      ||    ||  ||  |||    |   | ||| ||               
AGACGGTCTAGGAGCAGAGATTGTGGGCACATTCGTCCTAGTTTACACCGTATTTTCTGCCACAGATGCCAAACGAAACGCCCGCGATTCTCACGTTCCTgtgagta------cccacttcattcttgtccatggcctttaagctcaaggttcaactagtgctgcattggtttctttgctttcttgcagttttactcccaagct-tg---------------

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttccca-ctacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataa-taattgtag-------------------------------------------------------------------------
 ||||| |||||||||||||||||||| || || ||||| |||||||| || ||||| |||||||||||||||||||  || |||||||| || || || ||| || |  | | ||| | | |   ||| ||  |    || || ||   |||| |   |  ||   |  |  |||  |   |  | |   || | | |  |||| |  |     | ||  |                                                                           
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACGGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttcttcttccatccaaagctttggttgatt-cccctctcatgaagttt-tgcttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

upper sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttccca-ctacaatattgctt-attcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataa-taattgtag-------------------------------------------------------------------------
 ||||| |||||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||||||||||  || |||||||| || || || ||| || |    | ||| | | |   ||| || ||||   || || ||   |||| ||  |  ||   |  |  |||  |   |  | |   || | | |  |||| |  |     | ||  |                                                                           
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttctccttccatccaaagctttggttgattcccccctctcatgaagttt-tacttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208171563|gb|GD967130.1|GD967130
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|209713451|gb|BW679253.1|BW679253
EST:     AGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: AGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193305246|gb|FK270407.1|FK270407
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208036320|gb|GD835565.1|GD835565
EST:     ATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: ATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31473970|gb|CD415998.1|CD415998
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31473068|gb|CD415096.1|CD415096
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|192297999|gb|FG988413.1|FG988413
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193427091|gb|FK397090.1|FK397090
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|6964336|gb|AW433029.1|AW433029
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTACCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208185795|gb|GD983820.1|GD983820
EST:     TGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|207694055|gb|GD675102.1|GD675102
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTT-GGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGC
EST: gi|10232248|gb|BE801136.1|BE801136
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193304092|gb|FK271185.1|FK271185
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|214008371|gb|DB986313.1|DB986313
EST:     TTTTGTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31465520|gb|CD407548.1|CD407548
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|207695675|gb|GD677198.1|GD677198
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagA-TTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGC
EST: gi|207788930|gb|GD760278.1|GD760278
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31463980|gb|CD406008.1|CD406008
EST:     AGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: AGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193379777|gb|FK345335.1|FK345335
EST:     AGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: AGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31466573|gb|CD408601.1|CD408601
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31311203|gb|CD396406.1|CD396406
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193307898|gb|FK271542.1|FK271542
EST:     CTAGAGACTCTTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: CTAGAGACTC-TCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193385277|gb|FK352739.1|FK352739
EST:     CTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTT-CCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: CTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193433002|gb|FK395710.1|FK395710
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31305582|gb|CD390785.1|CD390785
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193446570|gb|FK413157.1|FK413157
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGTTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|22522357|gb|BU081168.1|BU081168
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208141725|gb|GD939539.1|GD939539
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGG
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGG
EST: gi|6072113|gb|AW101500.1|AW101500
EST:     TTT-CTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ANTTTGGCTTCACTTCCC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCC
EST: gi|31464161|gb|CD406189.1|CD406189
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31560937|gb|CD486775.1|CD486775
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|6726487|gb|AW310841.1|AW310841
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|16346247|gb|BI971842.1|BI971842
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|6725948|gb|AW310347.1|AW310347
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|6095240|gb|AW119907.1|AW119907
EST:     AAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: AAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|207799331|gb|GD769170.1|GD769170
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTT
EST: gi|31473817|gb|CD415845.1|CD415845
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|192330400|gb|FK022615.1|FK022615
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208122527|gb|GD925375.1|GD925375
EST:     GACTCTCACGTTCCTT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGC
genomic: GACTCTCACGTTCC-Tgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGC
EST: gi|208237390|gb|GE035230.1|GE035230
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCACTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193351184|gb|FK316746.1|FK316746
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193436782|gb|FK399541.1|FK399541
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208292628|gb|GE093750.1|GE093750
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31463750|gb|CD405778.1|CD405778
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31461519|gb|CD403547.1|CD403547
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193405313|gb|FK372634.1|FK372634
EST:     CTAGAGACTCTTCACGTTCCT                         A-TTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: CTAGAGACTC-TCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|7590667|gb|AW706477.1|AW706477
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193322086|gb|FK287006.1|FK287006
EST:     CTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: CTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31458370|gb|CD400398.1|CD400398
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193362471|gb|FK325309.1|FK325309
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193585727|gb|FK541211.1|FK541211
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|10710525|gb|BF010243.1|BF010243
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|13480718|gb|BG510061.1|BG510061
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193435986|gb|FK398974.1|FK398974
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193363859|gb|FK329665.1|FK329665
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTG
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTG
EST: gi|19938517|gb|BQ081757.1|BQ081757
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31472445|gb|CD414473.1|CD414473
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31468209|gb|CD410237.1|CD410237
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208236071|gb|GE033407.1|GE033407
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTG
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTG
EST: gi|193390471|gb|FK356419.1|FK356419
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193450025|gb|FK412579.1|FK412579
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGC
EST: gi|192298833|gb|FG988654.1|FG988654
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193542736|gb|FK501089.1|FK501089
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|6095052|gb|AW119719.1|AW119719
EST:     AGAGACTCTCACGTTCCT                         ATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: AGAGACTCTCACGTTCCTgtatgtattc ... ataattgtagATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgcttattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA