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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTTTAGATACTTCAGAGGAGGAATTGAGGGCATGGTTGAGGGATGGATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtaggaatgtccttcattgtgttctatacttgtgtattgccttttttttcttttccgtgtgtgtgtgcttaggtttaatgttttttgttttctaatgtgcagacattaagttagggagcttgtttatttgtgtcctctttcttctaaggaatctatttttgaattcag

Basic information

species Glycine max
transcript GLYMA08G01800.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193490545|gb|FK453388.1|FK453388
EST:     GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAATGAGCTAATCGGTG
genomic: GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtaggaa ... ttgaattcagGGAAGTGGTTCTTTGAATGAGCTAATCGGTG
EST: gi|193422084|gb|FK386757.1|FK386757
EST:     GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAATGAGCTAATCGGTGTGAAAAGGTTTCTGGTAGCT
genomic: GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtaggaa ... ttgaattcagGGAAGTGGTTCTTTGAATGAGCTAATCGGTGTGAAAAGGTTTCTGGTAGCT
EST: gi|208245014|gb|GE039881.1|GE039881
EST:     GATCTGTATTATGCAGCATTTTGGACAATCTCGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAATGAGCTAATCGGTGTGAAAAGGTTTCTGGTAGCT
genomic: GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtaggaa ... ttgaattcagGGAAGTGGTTCTTTGAATGAGCTAATCGGTGTGAAAAGGTTTCTGGTAGCT
EST: gi|208181415|gb|GD974668.1|GD974668
EST:     GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAA
genomic: GATCTGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtaggaa ... ttgaattcagGGAAGTGGTTCTTTGAA