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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtacccttcaattcttgtgcatccgcaacgttaatgggaacaagggtcttcctcaaaattcaatttttatttatttatttattatacactgata...

Basic information

species Glycine max
transcript GLYMA08G00740.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G63620.2 (Arabidopsis thaliana), 5'ss of exon 1
ATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtacccttcaattcttgtgcatccgcaacgttaatgggaacaagggtcttcctcaaaattcaatttttatttatttatttattatacactgata
||||||||||| |||||| | || || || ||||| ||||||||||| |||||||| || || ||||||||  ||  |||| ||||||||||||| || |||     |   ||||| ||  || |  |        | |||  | |  |      |  | ||| || | | || ||||  |  ||| |    ||      
ATGCGTGGAGCCGTGTATCGCGAGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAATTCTCATCAAAACCAAAGgt-----tcttcttcattttctgggatttgattgaatcaatttgtaggattcgagttttgaaagtt-agtattcattt--tcgtttgtgg-gcag-----

upper sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g03150.t01 (Vitis vinifera), 5'ss of exon 1
ATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtacc-cttcaattc-ttgtgcatccgcaacgttaatgggaacaagggtcttcctcaaaattcaatttttatttatttatttattatacactgata
||||| ||||| |||| ||||||    |||| ||| || |||||||| || || |||||||||||||| ||||| || ||||||||||||||||| || ||| |     || || || |||  |  |  |        ||  |     ||    |||     |  ||    ||   ||||   |   | || |  | | |  
ATGCGCGGAGCAGTGTTTTGGGAGGTTAACAGGCCTCTCACCATCGAAGATTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAGgtcaaatctccactccacttcactacgttttatttttatttttttccccagaaatctcagaaatgatcggcttggaatttgaatgagttttctgaattta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329030|gb|GR833402.1|GR833402
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|298172796|gb|HO020350.1|HO020350
EST:     ACTTCACATGCCCCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|192331064|gb|FK020284.1|FK020284
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|192294016|gb|FG987185.1|FG987185
EST:     ATTTCGCATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|192330970|gb|FK023125.1|FK023125
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|254330134|gb|GR839687.1|GR839687
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|209714515|gb|BW684878.1|BW684878
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|4396346|gb|AI495343.1|AI495343
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT