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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACTCAATGTCTCAAGAGGTCCCGCAGTTCGTGCATTACGTGCTCAGACTGATAAAAGGGACTATGCCTTGCAAATGAAAACTGTTGTAGAAAGGCAAgttcagacttaataatgttatatgcatttgtcatgtaagggatgatgcag

Basic information

species Glycine max
transcript GLYMA08G00380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00380.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g01690.t01 (Vitis vinifera), 5'ss of exon 4
TGTACTCAATGTCTCAAGAGGTCCCGCAGTTCGTGCATTACGTGCTCAGACTGATAAAAGGGACTATGCCTTGCAAATGAAAACTGTTGTAGAAAGGCAAgttcagacttaataat-gttatatgcatttgtcatgtaagggatgatgcag------------------------------------------------------
     | ||  | ||||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||   |||| || ||||||| | ||  ||  |  | |||      | | ||  |   ||     ||                                                          
-----TAAACATATCAAGAGGTCCTGCTGTTCGGGCATTGCGTGCACAGACTGATAAGAGGGACTATGCTTTGCAAATGAAAAACATTGTGGAGAGGCAAGCTTAgttttcttctttgttggcaaaaatagtagtaagagtatcaatttccaattggctcaactagaggcagtggagagccaagtttatttgcttaatagttcta