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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAAgtgagtcatccatgatattagattctactttgggggatggactgctactgctacccatcccattcccattaccatatagctttagacttttgctgttttatgttggcag

Basic information

species Glycine max
transcript GLYMA07G40290.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40290.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 5
TTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAAgtgagtcat--------ccatgatattagattctactttgggggatggactgctactgctacccatcccattcccattaccatatagctttagacttttgctgttttatgttggcag
|||| ||||| |||| |  ||||||| ||||  | |  ||||||||||||   |  ||||||||||||||||||||||||||||| ||| | || ||||||| | | |         |||  ||||||| |  ||       |  |||| ||  | |  |  | ||   |||    |   ||| |   |||  |  | |  |  || |         
TTACATTTCCGTCTGGAGCTGAGTGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAAAATCGTGATTATAAAAAgtaattgaagttagttgccagtatattagttcttaa--caatgactggattggaagtagttgctattatattttgtt---catttttttttttatctctaatacttcag--------

upper sequence: GLYMA07G40290.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 6
TTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAAgtgagtcatccatgatattag-attctactttgggggatggactgctactgctacccatc-ccattcccatta---ccatatagctttagacttttgctgttttatgttggcag
|||| |||||  | |||| ||||||| ||||  | |  || || || || ||||  |||| ||| ||||| || ||||||||||| ||||| |||||||||||||| || | ||    | | |   | | | | | | | ||      |    |   ||    ||||   ||    |  | ||| || |    ||  ||| |            
TTACCTTTCCGACCGAAAGTGAGTGGGACAAAATGAAGGAAAAGGGTTTTCTCCAGAGGACTGGGATGCAATATCACTGGAAAAATCGTAATTACAAAAAgtgagtgattcttggctgtggtaacatgcctagtgaggtagaaattcgcataaaaaaatgattattctgtttgattctttttaggttcaa--cttcactgct------------