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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATTCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtacttaggtatatatagtagcacatatgtatgtctctgatatataataatccgttcggtttcttctcgttcttcttccatgatatctatctatcatgaa...

Basic information

species Glycine max
transcript GLYMA07G40140.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40140.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02450.1 (Arabidopsis thaliana), 5'ss of exon 2
CCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATTCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtacttaggtatatatagtagcacatatgtatgtctctgatatataataatccgttcggtttcttctcgttcttcttccatgatatctatctatcatgaa
|||||||||||| ||||| ||||| |||||||||| ||| || |||||||| ||||||||||||||  | ||||| |||||||| ||    || |||||||||   |      ||||     | |||| |     ||  | ||| |   ||     |         | ||    | |  |  ||    ||  |||   | 
CCTAGTTTTCTACTCTGGTAAAGCCCCTAAAGGCACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCATGAAACCGAGAAGTACCAAAAGgtataaattctactataactctatatatatcctattcatacatacatagatataaccctagctaggtggtgaggcctttaaaattgaaattaatccctag

upper sequence: GLYMA07G40140.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g02020.t01 (Vitis vinifera), 5'ss of exon 3
CCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATTCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGgtacttaggtatatatagtagcacatatgtatgtctctgatatataataatccgtt--cggtttcttctcgttcttcttccatgatatctatctatcatgaa-
 || |||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||| || ||    |||||||||   |  |||||   |     ||||| | | |    | |        | | |     | |        |  |     |  |  | |  |||     |||  
TCTTGTTTTCTACTCTGGGAAGGCTCCTAAAGGCATCCGAACAAGCTGGATCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAGgta---aattatatcaggctaatcatatctttataagggtttctcccccacctgcagatgatgatgatcaggacagtagcagtactgtacatcatctttgatt