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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatttttatttttatttttaaaaaaaatccctttttcttctgcacatcacattttccgattcttgttagttagttctaataggaataacgttgtattctgcaccag

Basic information

species Glycine max
transcript GLYMA07G40090.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40090.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatttttatttttatttttaaaaaaaatccctttttcttctgcacatcacattttccgattcttgttagttagttctaataggaataacgttgtattctgcaccag
|| | ||| |||||||| |||||||  || || |||||||||||  |||||||||||||||| ||| | || || |||| ||  ||||| ||||| |  ||| |   |  ||       |  |||||       | ||  |    || || |           | ||||||||    |  ||||| | ||| | | |||   | ||||    
GGATATCCATATGAAGAAATTCTAAGGACCTTCCACAATCAGACCAGCATAGTCATGTGCTCATACTTGCCTATTTTCAACAAATTTAACAGAACCAATGgttagttaccttc-----cagctttaatgtctgcctctaataaaactcca-actgtggggcttg-ttcttgtttcagatatctaaaatgaa-atctttggtatgtgcag---

upper sequence: GLYMA07G40090.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 5'ss of exon 4
GGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatttttatttttatttttaaaaaaaatccctttttcttctgcacatcacattttccgattcttgttagttagttctaataggaataacgttgtattctgcaccag
|| | ||| |||||||| ||||| |  |||||||||||||| ||  ||||| | |||||||| ||||| || || ||||| |||||||| |||||||  ||||  | |  |    |||  |          || |      | |  ||   ||    ||  || | | ||   |   |    |||| | |||    | |    |     |||
GGGTATCCATATGAAGAAATTCTGAGGACATTTCACAATCAAACCAGCATAATTATGTGCTCATACCTACCGATTTTCACAAGCTTTAACAGAACAAAAGgtaccccagctaatatttcgtc---------aaccttacagtttggtggggatgg-gttgcccaagt-ttaacacaaaaacttaat-gtaatgttttgggtaccccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193664269|gb|FK608793.1|FK608793
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAA
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatt ... tctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAA
EST: gi|254320158|gb|GR829346.1|GR829346
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatt ... tctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG
EST: gi|15200976|gb|BI424628.1|BI424628
EST:     AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG                         GTGGCTTGTTTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatt ... tctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG