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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCAGTGGTAGAGTGTTTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgtttctcctcataagcaaaacgttcgtgctctattatactcttaactcttaaggatgttatgctttggattctttgttgcag

Basic information

species Glycine max
transcript GLYMA07G40060.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40060.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 2
------TAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCAGTGGTAGAGTGTTTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgtttctcctcataagcaaaacgttcgtgctctatta-tactcttaactcttaaggatgttatgctttggattctttgttgcag--------------------------------------------------------------------------------------------------
      | |||||||||| |||||||| ||||| ||||| ||| ||||||||||  | |||||||||||||      | || || |||||||||||||||  | ||||| | |  ||||    | |||  |   | ||  |  |   ||  |  ||||    |  ||  ||  |     || | ||   | ||                                                                                                      
AGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAATGGGTGATTCAGAGT------CGGATGATGATGATGAATATGACCACTTGgtttgttcttttcctaccttaaatagcgcattgattataatttggttttcttcttcccaaaatattgttcatgtttgtttggctattttcattttttctttttgcttgtctctaccaacaaaacataaaaaggaaaatgttgagttcctttgtaagattttttccttttcctttttttttttggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208120333|gb|GD917916.1|GD917916
EST:     TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATG                         GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
genomic: TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgt ... tttgttgcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
EST: gi|193592283|gb|FK546551.1|FK546551
EST:     TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATG                         GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
genomic: TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgt ... tttgttgcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
EST: gi|151396369|gb|EV266246.1|EV266246
EST:     TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATG                         GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
genomic: TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgt ... tttgttgcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
EST: gi|192324872|gb|FK015368.1|FK015368
EST:     TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATG                         GAAAATCGGATGACAGGTACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
genomic: TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgt ... tttgttgcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
EST: gi|19345980|gb|BM890860.1|BM890860
EST:     TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATG                         GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT
genomic: TTGGTGATTCAGAGTCCGAATCAGACGACGATGATGAATATGACTCCATGgttcgcttgt ... tttgttgcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCTAGGAAAGGAAAGGAT