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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCCACGCGCCGCATGCAAATCGGAAGCTGAAGATTGGCGTGGTTCTGTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaataatcttctattgagttgagttgaatcagtgttttgattctgcgtgttgcgtaggtttatgtggttttgttttaatttgaacgtttgattttggttttag

Basic information

species Glycine max
transcript GLYMA07G39380.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 2
GATTCCCACGCGCCGCATGCAAATCGGAAGCTGAAGATTGGCGTGGTTCTGTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaataatcttctattgagttgagttgaatcagtgttttgattctgcgtgttgcgtaggtttatgtggttttgttttaatttgaacgtttgattttggttttag
  |     ||||| ||   |  ||| |||| ||||||||||||| |||||||| || ||||| || ||||| || |||||||| || |||||||| |||||| | ||   |  ||| |   | |||  |    |  |  |||   |  ||  || || | |  ||  |  |      |  | ||||   |||||| | | |||     
AGTGAGTCCGCGCTGCCGTCGGATCAGAAGTTGAAGATTGGCGTTGTTCTGTCTGGAGGCCAAGCGCCCGGAGGACACAATGTGATCTCTGGAATATTCGgtgaggatcga--ttcgacatatttggatcttgtgtgattttgactcttgtttgatgtggaaattcgttgga----ataatgattttt-cgtttgttgtcggtag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318249|gb|GR832417.1|GR832417
EST:     GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG                         ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: gi|7591049|gb|AW706790.1|AW706790
EST:     GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG                         ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: gi|207700556|gb|GD683663.1|GD683663
EST:     GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG                         ATTACCTGCAAGACCTTGCAGAA
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAA
EST: gi|193585833|gb|FK541233.1|FK541233
EST:     GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG                         ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: gi|254323780|gb|GR836119.1|GR836119
EST:     GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG                         ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: gi|213599182|gb|DB958401.1|DB958401
EST:     GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG                         ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG