Sequence
atgc intronic sequence ATGC exonic sequenceTTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACCCGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaactatgaacaaaaatgagtgaatactacatcactacatcagctgaggagaatatgatcttgaagttttctgtttctgttatgcag
Basic information
species | Glycine max |
transcript | GLYMA07G39320.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 5'ss of exon 1
TTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACCCGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgta-tgaactatgaacaaaaatgagtgaatactacatcactacatcagc-tgaggagaatatgatcttgaagttttctgttt-ctgttatgcag
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TTTTAAACTGGATGCCTGATGCTCTTAAGATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTACTTGAGGATTTACTTGATTGGgtaatcaaaaaatgttttgttcttgcatacagttactaattatagctttgttttttttttctaatggtttttttttttgtttactattttatag
upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G11960.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACCCGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaactatgaacaaaaatgagtgaatactacatcactacatcagctgaggagaatatga-----tcttgaagttttctgtttctgttatgcag
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TCTTGAACTGGATGCCCGCGGCTCTAAAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCTGCTGTCTACTTGAGGATTTACTTGATAGGgtactaatgtt--tttgtgatttgcttgtgaaaggttgttgcttttgattagtatgatcttaaaaactaatgttgttttctctgtttttt-ttcag
upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 1
TTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACCCGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaactatga-acaaaaatgagtgaatactacatc--actac-----atcagctgaggaga-atatgatcttgaagttttctgtttctgttatgcag
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TTCTGAATTGGATGCCAGATGCCCTGAAAATGCCAGAACCTGAGCTTATTGAACATGCAGGATTAGATTCTGCTGTCTACTTGCGTATTTACTTGATAGGgtatggatctcaatatgtcatctattttgtttttcttccagttgcttgttattagttaagctgtcatcagtgcttgtagctccataattgctggttgcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193628773|gb|FK577609.1|FK577609EST: GACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGG ACTTAAAATCTTTGTTCCAATAGCATTTCTGGCATGGGCAGT
genomic: GACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaacta ... tgttatgcagACTTAAAATCTTTGTTCCAATAGCATTTCTGGCATGGGCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTGAATTGGATGCCAGCTGCACTTAGAATGCCGGAACCCGAACTCATTGACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaactatgaacaaaaatgagtgaatactacatcactacatcagctgaggagaatatgatcttgaagttttctgtttctgttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT