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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGAAGTTAGAGTACCTGAGTATGGCTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctcaattcttcctctttcaggatctctgtgtgtttgattcggcgatttatttttttttattttttatattgcag

Basic information

species Glycine max
transcript GLYMA07G38920.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38920.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21790.1 (Arabidopsis thaliana), 5'ss of exon 2
--------------AATTGAAGTTAGAGTACCTGAGTATGGCTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgt-----ttgc---tctcaattcttcctctttcaggatctctgtgtgtttga----ttcggcgatttatttttttttattttttatattgcag--------
               ||  || | ||||| ||||||||||| |||||||| |||||  | |||||||| ||||||||  | ||||| ||||||     |||    | || |||   |   |   ||| | | ||||| | | |     |  | ||||   |||| || | ||| | | |||           
GTTCAACTGATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattgtgtgtttctattgaccaattgatagggtttttgtgtttgtcagcacctttgggattatgttttgttgaatttctctgttgtgtgtgtgcag

upper sequence: GLYMA07G38920.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 2
--------------AATTGAAGTTAGAGTACCTGAGTATGGCTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctct--caattcttcctctttcagg-atctctgt---gtgtttgattcggcgatttattttttt--ttattttttatattgcag
               |||||| | ||||| || |||||||| ||||| ||||||||  |||| ||||| ||||||||||| ||||| ||||||    | |     | |||  | |||  |  || ||| |   ||||     |     ||||  |||||   | | ||| | ||||||||
ATTCAACTGATAAGGATTGAACTGAGAGTGCCAGAGTATGGTTGGACGACGCAGAAGGTTTTCCATCTTATGAACTTCATCGTCAATGGAGgtgaaatatagtgttgcttgatattttggttatttctttcttgtgtggatgtttattatttggtttttgggtgaatttgtgtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268856|gb|CA819919.1|CA819919
EST:     CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAG                         TTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
genomic: CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctc ... tatattgcagTTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA