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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAATTGGTCAGAATTGAAGTTAGAGTACCTGAGTATGGCTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctcaattcttcctctttcaggatctctgtgtgtttgattcggcgatttatttttttttattttttatattgcag

Basic information

species Glycine max
transcript GLYMA07G38920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21790.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTCAATTGGTCAGAATTGAAGTTAGAGTACCTGAGTATGGCTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgt-----ttgc---tctcaattcttcctctttcaggatctctgtgtgtttga----ttcggcgatttatttttttttattttttatattgcag--------
 ||||| || | || ||  || | ||||| ||||||||||| |||||||| |||||  | |||||||| ||||||||  | ||||| ||||||     |||    | || |||   |   |   ||| | | ||||| | | |     |  | ||||   |||| || | ||| | | |||           
GTTCAACTGATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattgtgtgtttctattgaccaattgatagggtttttgtgtttgtcagcacctttgggattatgttttgttgaatttctctgttgtgtgtgtgcag

upper sequence: GLYMA07G38920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 2
ATTCAATTGGTCAGAATTGAAGTTAGAGTACCTGAGTATGGCTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctct--caattcttcctctttcagg-atctctgt---gtgtttgattcggcgatttattttttt--ttattttttatattgcag
|||||| || | || |||||| | ||||| || |||||||| ||||| ||||||||  |||| ||||| ||||||||||| ||||| ||||||    | |     | |||  | |||  |  || ||| |   ||||     |     ||||  |||||   | | ||| | ||||||||
ATTCAACTGATAAGGATTGAACTGAGAGTGCCAGAGTATGGTTGGACGACGCAGAAGGTTTTCCATCTTATGAACTTCATCGTCAATGGAGgtgaaatatagtgttgcttgatattttggttatttctttcttgtgtggatgtttattatttggtttttgggtgaatttgtgtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310714|gb|FK001138.1|FK001138
EST:     CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAG                         TTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
genomic: CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctc ... tatattgcagTTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
EST: gi|22524008|gb|BU082819.1|BU082819
EST:     CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAG                         TTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
genomic: CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctc ... tatattgcagTTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
EST: gi|26268856|gb|CA819919.1|CA819919
EST:     CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAG                         TTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
genomic: CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctc ... tatattgcagTTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
EST: gi|209705750|gb|BW661418.1|BW661418
EST:     CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAG                         TTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
genomic: CTGGACTACGCAGAAAATTTTTCATCTCATGAACTTCATTGTCAACGGAGgtttgctctc ... tatattgcagTTCGTGCTGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA