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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacttctcttaattttttatttttcttattcagctttcaattacatgcttaactgcataatttaagttgcattatgattttgatttgttagaa...

Basic information

species Glycine max
transcript GLYMA07G38160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 2
TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacttctcttaattttttatttttcttattcagctttcaattacatgcttaactgcataatttaagttgcattatgattttgatttgttagaa
| || ||| | |  ||   ||| || ||||| ||  |||| || |||||||| ||||| |||||||| ||||| || || || |||||||||||||| |||| |||  |      |     | || ||  | |  ||    ||    ||   | |||   |    |  |   | || |  | | ||||     | | |  
TGATCTTGCTGATGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTCTTCATCTACCTCCTCCCTCCGATCATCTTCAATGCAGGgtaagtagaaacgcttcggcgtgttcttgctgtggttagatttcggcttcagttcttttgttggcacatggtggtgtacaaggtttttctggggattggg

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G027851_T01 (Zea mays), 5'ss of exon 2
TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttca----cttctcttaattttttatttttcttattcagctttcaattacatgcttaactgcataatttaagttgcattat-gattttgatttgttagaa
| ||  || | |||||    || || ||||| || ||  | || ||||| || || || |||||||| ||||| || || |||||||||||||||||||||| ||   |    | ||  ||  ||  |      |  | ||    |    ||| |    | | |||  |     | | ||  |  | | ||| ||| |       
TGATCCTGCTGACCACCAAGGGGAAGAGCTCGCACATCCTCGTCTTCAGCGAGGACCTCTTCTTCATCTACCTCCTACCTCCCATCATCTTCAATGCCGGgtaagccaaacggcgtccgttgcttcctcgcacatgcttttgctttgctgatttcggtttcatctgagtggcgcaggctggttggtaggtttcgatcttg-----

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacttctcttaattttttattt----ttcttattcagctttcaattacatgcttaactgc-ataatttaagttgcattatgattttgatttgttagaa
| || ||| |||  |  ||||| ||||||||    ||  | || || ||||||||||| ||||| ||||| ||||||||||| || || ||||| || |||| |||||  ||    ||   ||| ||      ||   | || |  || | | |||   ||   ||  | |                                  
TGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGgtaagttctttttatatagaatttcatgaaaaattgaaagtcggaattgagtaacacatttttttgttacag---------------------------------

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 3
TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacttctcttaattt---tttatttttcttattcagctttcaattacatgcttaactgcataatttaagttgcattatgattttgat--ttgttagaa
||||  |  | |||||  ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| |||| ||||   || |||||||      |   |||   ||||  | |    ||||  |  | ||  |  | |||||  |  |   |  | || |||  || ||    
TTATTCTACTAACCACCCGAGGAAAAAGCTCACATATTTTAGTATTCAGTGAAGATCTTTTCTTTATTTATCTTCTTCCACCTATCATTTTTAATGCTGGgtaagttggatt-tcttaatgcaaactcgatttgaatattttgttcgtcatta--tcatcaatggattcatttatttatccagagcagttagatgcttattct--

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 2
TTATATTGTTTACCACGGGAGGAAAAAGCTCTCATATATTAGTTTTCAGTGAAGATCTTTTCTTCATTTACCTTCTTCCACCCATCATCTTCAATGCCGGgttagttcacttctcttaattttttatttttcttattcagctttcaattacat-gcttaactgcataatttaagttgcattatgattttgatttgttagaa
|  | ||| || | |    |||  || | ||||||||  | |  ||   |||||| ||||||||||| |||||||||||||| || ||||||||||| ||||  ||| || |     | ||      | ||  |    |   |  | |      |  || || || | | |   ||   |   ||| |||  ||| |    
TAGTGTTGATTTCAAGCAAAGGTCAAGGTTCTCATATTCTGGAGTTTGATGAAGAGCTTTTCTTCATATACCTTCTTCCACCTATAATCTTCAATGCTGGgtatgttaacgttatccacttgacatctattgctgaagaaactgaagtagagcaggatagcttcagattctctattat-tgtcgatcttgtgttggtgacc