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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATAATGGTCATTTTTCCACTTCTGCTCTCTCTGGCTTCGTTCGAGCACAGgtttaccatttttcaaatacattacttattgcattatggtttactattatttagagtattggcaacttagagcttccaatgacagcacacattgcctttt...

Basic information

species Glycine max
transcript GLYMA07G37700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37700.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g46490.1 (Oryza sativa), 5'ss of exon 3
CCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATAATGGTCATTTTTCCACTTCTGCTCTCTCTGGCTTCGTTCGAGCACAGgtttaccatttttcaaatacattacttattgcattatggtttactattatttagagtattggcaacttagagcttccaatgacagcacacattgcctttt-
|||||||||||| ||||| |||||||| ||| |||||||||||||  | ||  |||| |  ||  |||| | |||||||||||| ||| | || || |||||  |  ||  ||  ||    ||  |||||    | ||  | | | |   || | | | || |   ||   |  |      |   |   |||   | |   
CCATGCCTCGGTCCAGATCAACATTGGGCATGTGGATGAGAATGGGCTGTACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgta-attatcattgtaaacttttgtttatttacatgtgcctgaatttctctttgtgaactgtctcattgctgtattgctctatttcctgcatgatcatgaa

upper sequence: GLYMA07G37700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G093574_T01 (Zea mays), 5'ss of exon 3
CCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATAATGGTCATTTTTCCACTTCTGCTCTCTCTGGCTTCGTTCGAGCACAG-
||||||||| || ||||| ||||||||||| ||||||| ||||||  | ||| ||||||| ||  | || | |||||||||||| || || || || |||      ||| |  || | |  | | ||||  |     |  ||  |||||    |  | || |||  | | || |   ||||    | || |      || ||| | 
CCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgatagttcatgatatgtttattgcatttgtctagcccataaagtttaaagct--tgagtgtaaagcctacatgaggcttt---ttactgtctgtgtttcctgt-

upper sequence: GLYMA07G37700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G125300_T02 (Zea mays), 5'ss of exon 3
CCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATAATGGTCATTTTTCCACTTCTGCTCTCTCTGGCTTCGTTCGAGCACAG-
||||||||| || ||||| ||||||||||| ||||||| ||||||  | ||| ||||||| ||  | || | |||||||||||| || || || || |||      ||| |  || | |  | | ||||  |     |  ||   ||||    |  | || |||  | | || |   ||||   |       |    || |||   
CCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttcatgatatgtttattgcatttgtctagcccataaaatttaaagct--tgagtgtaaagcctacatgaggctttttactgtc-tatgtgtttcct---