Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatacccatcaatatataattatttgcacatttcattgatcgtcaaatcttaattaattttgtcactttgattctttcttctcctttttagtactttggatttgggttgggactaataattaaaatatttcttgcggtgcacgcaaaacag

Basic information

species Glycine max
transcript GLYMA07G36640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0077g00730.t01 (Vitis vinifera), 5'ss of exon 2
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatacccatcaatatataattatttgcacatttcattgatcgtcaaatcttaattaattttgtcactttgattctttcttctcctttttagtactttggatttgggttgggactaataattaaaatatttcttgcggtgcacgcaaaacag
||||||||||||| || ||||| ||||| ||||| || |||||||| ||||||||| | |||||||| |||||||| || || |||||||||  ||| |||||||    ||||      ||   |||  |   | ||| ||         ||||||| |||  | | | |||  |               |  |      |     ||  |||  | ||| ||||   ||||||    | ||          
GATTTGCGTTCATCACCAAGAGCGAAGTTGATCATCTTGACGATGGATACAGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtata----tcaaatcccgatc--ttggtccccttattcat---------ttaattattttcttaattatgaagc---------------aaaaggaaaaaaaaaagtgtgga--agtaactaaacattttcttaattttcag---------

upper sequence: GLYMA07G36640.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S25_173V6.1 (Physcomitrella patens), 5'ss of exon 4
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatacccatcaatatataattatttgcacatttcattgatcgtcaaatcttaattaattttgtcactttgattctttcttctcctttttagtactttggatttgggttgggactaataattaaaatatttcttgcggtgcacgcaaaacag
 || |||  |    ||    |  || || |||    | ||||||||||  |  |||||||||||||| || ||||| ||||||||||||||| |||| |||||    |||||         | |    ||  ||| |  ||| | | |     ||  | | || | | | |               ||  | |  ||||||||||| | | | |                                      
TATATGCCATTGAAACTCGCACGGATGTTGATATAATGGACGATGGCTTTAAGTGGCGCAAGTACGGCCAGAAAGCTGTCAAAAACAGCCCTTATCCCAGgta----catca---------tgtcgatacccttctt--atcatgacagtaagatcgaatatgcctcat-gtcgggacgggacagattgaaatcatttggatttggat-gcggcag------------------------------------

upper sequence: GLYMA07G36640.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S159_105V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtataccca-tca--atatataattatttgcacatttcattgatcgtcaaatcttaattaattttgtcactttgattctttcttctcctttttagtactttggatttgggttgggactaataattaaaatatttcttgcggtgcacgcaaaacag
|||||||  |||  ||    |  || |||||   | | |||||||| |  | ||||||||| || || || ||||||||||| ||||||||||||||||||| |  |   |||  |       ||||   || ||| |    ||| |||| ||| | |||          | |||||        || || | ||   | || |                                                   
GATTTGCCATCAAAACGCGAACCGACGTGGACATCATGGACGATGGTTTTAAATGGCGCAAATATGGCCAGAAAGCCGTCAAGAACAGCCCTCATCCAAGgtttgtctggtcaccacgcgcgtttatcaccatattccccccatcttcaagtct-agttagcaacaagtatctgattaaa----atcgttctgagatatgtgcag--------------------------------------------------

upper sequence: GLYMA07G36640.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S198_83V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatacccatcaatatataattatttgcacatttcattgatcgtcaaatcttaattaattttgtcactttgattctttcttctcctttttagtactttggatttgggttgggactaataattaaaatatttcttgcggtgcacgcaaaacag
||| |||  |||  || |  | |||  |||||  |||||| ||||| | ||  ||||||||||| || || |||||||| || |||||||||||||| |||||  |   | ||||  |  || ||   || |    || | | |  ||  |  | || || ||      | |    | ||   |  |  ||||||     || |  |                                             
GATATGCTATCAAAACCAGAACTGATATGGATGTCCTCGATGATGGTTTCAAGTGGCGCAAGTATGGGCAGAAAGCCGTGAAGAACAGCCCTCATCCTAGgtaagct--ttaatacct--tttttatgacttgaagttcaacttttaacttgtagta-ttctgcagtaatcaa--ctgctagcctatcgtagtacgaca-atataagc--------------------------------------------

upper sequence: GLYMA07G36640.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10059 (Selaginella moellendorffii), 5'ss of exon 1
GATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTACAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGgtatacccatcaatatataattatttgcacatttcattgatcgtcaaatcttaattaattttgtcactttgattctttcttctcctttttagtactttggatttgggttgggactaataattaaaatatttcttgcggtgcacgcaaaacag
| | |||  |    || ||||| ||   |||   | | |||||||||||| | ||| | |||||||| ||||| |||||||| ||||||||  | |||||||     |  ||       ||| |  |   |    |  ||  |  | |     |  |||    | | || |   | ||    |          ||  | ||                                                   
GGTATGCCATACAAACCAAGAGCGACAAGGAGATCATGGACGATGGCTACCGGTGGAGGAAGTACGGACAAAAGGCCGTCAAGAACAGCCCATACCCAAGgtgcgtacggcaggcctccattgtgagaggagag-agagagagagagaggc-gaggaatgcgttgaattggggccattggattgaccacctccacgatcgac--------------------------------------------------