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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGCGATTCGGAAAAATGATGCCGAAAAGGTTCTCAAGATCGCTAACGTGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGgtggatcctccaatccttttctgtttcaaatattgtataacaacaatgaagaccgttttcagaatgtgtgtttaatattctttatttatgattcattttgtcaatctgttttgttggtaatttgattttattttctttggttgtgtttttcatgcag

Basic information

species Glycine max
transcript GLYMA07G36610.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713259|gb|BW684346.1|BW684346
EST:     TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAG                         GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
EST: gi|6070813|gb|AW100200.1|AW100200
EST:     TGAATGGTGAAAAATATTCACTCTGTACTTATCCTGCCGATCCTCTCCAG                         GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
EST: gi|213589192|gb|DB957724.1|DB957724
EST:     TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAG                         GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
EST: gi|19348464|gb|BM892996.1|BM892996
EST:     TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAG                         GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
EST: gi|213603198|gb|DB960461.1|DB960461
EST:     TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAG                         GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCTGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATTTGTGG